Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1989 228 8e-55 seq2631 136 4e-27 seq1678 120 3e-22 seq4087 114 1e-20 seq7448 93.3 4e-14 >seq1989 Length=5200062 Score = 228 bits (252), Expect = 8e-55 Identities = 489/728 (67%), Gaps = 16/728 (2%) Strand=Plus/Minus Query 13572 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGT 13631 || ||||| | ||||| || | ||||| || ||||||||||| || ||| |||| Sbjct 4401869 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 4401815 Query 13632 GATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGT 13691 || ||||| |||||||| |||||||| || | | || || || | |||| ||| Sbjct 4401814 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 4401755 Query 13692 TCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13751 || | ||| || || | | ||||||| ||||| ||||| | |||||||| Sbjct 4401754 TCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 4401697 Query 13752 CCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCT 13811 || || || || ||||| | | || | ||||| | |||||| ||||| | Sbjct 4401696 CCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-- 4401639 Query 13812 TTTATAATAATTG---TAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATT 13868 | ||||| || | || |||| | || | | || || || || || Sbjct 4401638 -TGATAATTCTTCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATC 4401580 Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 | || ||||||||||| || | |||||||||| |||||||||||| || ||||| || Sbjct 4401579 AGGCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTG 4401520 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAG 13988 | || ||||||| ||||||||| || | ||| ||||| | ||||| | || |||||| Sbjct 4401519 AGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG 4401460 Query 13989 AATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTC 14048 | | || || |||||||||| ||| | ||||| ||| | | ||| ||||| | Sbjct 4401459 A---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCC 4401403 Query 14049 GATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCA 14108 ||||| | ||||| || | || || | | || ||| |||||||| ||| Sbjct 4401402 CCAATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCA 4401343 Query 14109 TTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATAC 14168 || || | ||||| | |||| | | | ||||| || |||||||| || |||||| Sbjct 4401342 TTGAAGCGAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATAC 4401283 Query 14169 ATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGAC 14228 ||| |||| |||||||||||||| || || || || ||| | || || | ||||| | | Sbjct 4401282 ATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTC 4401223 Query 14229 CATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCT 14288 || ||||| | | ||| || |||| ||| |||| ||||| |||||||| ||| Sbjct 4401222 ACCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCT 4401163 Query 14289 GCAAAAAA 14296 |||| || Sbjct 4401162 ACAAAGAA 4401155 >seq2631 Length=7319754 Score = 136 bits (150), Expect = 4e-27 Identities = 240/345 (70%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| |||| |||| | | ||| ||||| ||||| || || |||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 | | || ||| ||||| ||| | ||||||||| | | | ||||||| Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 14052 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| | || |||| | | || || || | | | ||||||| |||| ||||| Sbjct 2078829 ATCCA-ACACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTCCAATGGCATT 2078772 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 || | | ||||| | ||||| || | |||| ||| |||||||| | |||| || Sbjct 2078771 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 2078714 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 ||||| ||||||||||| |||| || || || |||||||| || Sbjct 2078713 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCA 2078669 >seq1678 Length=10304083 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13894 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13953 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 13954 ttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14013 | | ||| ||||| | ||||| || ||||||||||| || || || ||||||||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 14014 CTATTAATCGTTCTCC 14029 ||| | ||||| || Sbjct 209319 CTACGACACGTTCACC 209334 >seq4087 Length=903614 Score = 114 bits (126), Expect = 1e-20 Identities = 135/183 (74%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 14119 ATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14178 ||||| | ||||| | | | ||||| || |||||||| | |||||||||||||| | Sbjct 28081 ATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAAT 28022 Query 14179 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGTACTT 14238 ||||||||||||| || || || || ||||| || || | ||||| | || |||| Sbjct 28021 GTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTT 27962 Query 14239 CCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATG 14298 | | ||||| || |||| |||||||| ||||| ||||| || |||||||| || | Sbjct 27961 CTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAG 27902 Query 14299 CCA 14301 ||| Sbjct 27901 CCA 27899 >seq7448 Length=2529 Score = 93.3 bits (102), Expect = 4e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13524 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13582 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1450 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1392 Query 13583 TTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13642 ||||| || | ||||| || |||||||||||||| || ||||||||||| ||||| || Sbjct 1391 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1332 Query 13643 CATAAAATCAAATGGATT 13660 |||||| |||||||| || Sbjct 1331 CATAAAGTCAAATGGGTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479659440872200