Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1989 206 3e-48 seq2631 127 2e-24 seq4087 114 1e-20 seq1678 114 1e-20 seq7448 84.2 2e-11 >seq1989 Length=5200062 Score = 206 bits (228), Expect = 3e-48 Identities = 484/726 (67%), Gaps = 12/726 (2%) Strand=Plus/Minus Query 13360 ACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGT 13419 || ||||| | ||||| || | ||||| || ||||| ||||| || ||| |||| Sbjct 4401869 ACTCCCATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGT 4401815 Query 13420 GATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGT 13479 || ||||| |||||||| || ||||| || | | || || || | |||| ||| Sbjct 4401814 GAAATATTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGT 4401755 Query 13480 TCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATA 13539 || | ||| || || | | ||||||| ||||| ||||| | |||||||| Sbjct 4401754 TCCGGCATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATC 4401697 Query 13540 CCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCG 13599 || || || || ||||| | | ||| | ||||| | |||||| ||||| | | Sbjct 4401696 CCAATGAGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTG 4401637 Query 13600 TTTATAATAA-TCTTAATAATGTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAA 13658 | || | ||||| | | || | || | | || || || || || | Sbjct 4401636 ATAATTCTTCCTCTTATTC-TCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAG 4401578 Query 13659 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13718 || ||||||||||| || | |||||||||| |||||||||||| || ||||| || | Sbjct 4401577 GCAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAG 4401518 Query 13719 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAA 13778 || ||||||| ||||||||| || | ||| ||||| | || || | || ||||||| Sbjct 4401517 GCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA- 4401459 Query 13779 TATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGA 13838 | || || |||||||||| ||| | ||||| ||| | | ||| ||||| Sbjct 4401458 --TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCC 4401401 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | ||||| || | || || | | || ||| ||||| || ||||| Sbjct 4401400 AATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATT 4401341 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | |||| | |||| | | | ||||| || |||||||| || |||||||| Sbjct 4401340 GAAGCGAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACAT 4401281 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA 14018 | |||| ||||||||||| || || || || || ||| | ||||| | ||||||| | Sbjct 4401280 TCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCAC 4401221 Query 14019 TTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGC 14078 || || || | | ||| || |||||||| |||| || || |||||||| ||| | Sbjct 4401220 CTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTAC 4401161 Query 14079 AAAAAA 14084 ||| || Sbjct 4401160 AAAGAA 4401155 >seq2631 Length=7319754 Score = 127 bits (140), Expect = 2e-24 Identities = 238/345 (69%), Gaps = 5/345 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| | ||| || | |||||||| || ||||||||||| || |||||||| | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| |||| |||| | | ||| ||||| || || || || |||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 | | || ||| ||||| ||| | ||||||||| | | | |||||| Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 13840 ATCCATTTTCTAG-CCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| | || |||| | | || || || | | | ||||||| | || ||||| Sbjct 2078829 ATCCA-ACACAAGACCCAAACTGCCTTCTTCTTGA-CACAGGCATTGTTCCAATGGCATT 2078772 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 13958 ||| | | |||| | ||||| || | |||| ||| |||||||| | |||| || Sbjct 2078771 GAAGAGAAATTCCCTTTCTTTGTTATCTTTAATG--TGTGTCAATAAGGAGACTATTTAT 2078714 Query 13959 TTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 ||||| |||||||||||| |||| || || || |||||||| || Sbjct 2078713 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCA 2078669 >seq4087 Length=903614 Score = 114 bits (126), Expect = 1e-20 Identities = 195/279 (70%), Gaps = 8/279 (3%) Strand=Plus/Minus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 28058 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 27999 Query 13990 AAACCATAAAAACATCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAG 14049 || ||||| ||||| | ||||||| || || || | ||||| || ||||| Sbjct 27998 AAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAG 27939 Query 14050 TTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCC--AATATGTTTTTAATAAAGT 14107 |||||||| || || ||||| || |||||||| || ||| || ||| | ||||| | Sbjct 27938 TTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAAT--ATAAAAT 27881 Query 14108 ATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTC 14165 || ||| || || || || ||| | ||| || ||||| || || || || || Sbjct 27880 ATCTCTCCTCGGGCTTCAGGGATTCCCAGT--GCTGAATGTCCTTGGACAGGTCCACCTC 27823 Query 14166 ATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 || | ||||| || ||| | || || |||||||| Sbjct 27822 CTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACAT 27784 >seq1678 Length=10304083 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13682 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 13741 |||||||||| || |||||||| || |||||||| | || ||||||| ||||||||| | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 13742 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 13801 | | ||| ||||| | || || || ||||||||||| || || || ||||||||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 13802 CTATTAGTCGTTCTCC 13817 ||| | ||||| || Sbjct 209319 CTACGACACGTTCACC 209334 Score = 82.4 bits (90), Expect = 7e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 13930 ATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGA 13989 ||||| || |||||||| | |||||||||||||| ||||||||||| || || || || Sbjct 211311 ATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 211370 Query 13990 AAACCATAAAAACATCTAGCTTCTG 14014 || ||||| ||||| | ||||||| Sbjct 211371 AAGCCATAGAAACAGCGGGCTTCTG 211395 >seq7448 Length=2529 Score = 84.2 bits (92), Expect = 2e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 13312 TAAAAATCAACATCTAATGAAAAAACATTATCGTCTTTGT-TAGAAATAACGCCCATTTT 13370 || || ||| |||| || | |||| ||| || | || | | || || || ||||| | Sbjct 1450 TAGAAGTCAGCATCCAAGGTAAAAGAATTCTC-TGTTGGACTTGACATCACTCCCATCCT 1392 Query 13371 TTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTC 13430 ||||| || | ||||| || ||||| |||||||| || ||||||||||| ||||| || Sbjct 1391 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTCTC 1332 Query 13431 CATAAAATCGAATGGATT 13448 |||||| || ||||| || Sbjct 1331 CATAAAGTCAAATGGGTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478520403678120