Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq1989 230 2e-55 seq4087 125 6e-24 seq10880 102 7e-17 seq1678 82.4 7e-11 >seq1989 Length=5200062 Score = 230 bits (254), Expect = 2e-55 Identities = 571/856 (67%), Gaps = 32/856 (4%) Strand=Plus/Minus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || | ||||| || ||||| ||||| || |||| | |||||||| ||| Sbjct 4401857 TGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTCAGT-----GAAATATTCTCC 4401803 Query 12923 ATAAAATCGAAAGGATTTT----TCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| || || || || | || | || || || | || | ||| | | Sbjct 4401802 ATAAAGTCAAATGGGTTCTCTACTCTGAAAACC----TTGCTAAAACCCAGTTCCGGCAT 4401747 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 |||||| || ||| |||| ||||| || ||||||| | || ||||| || || | Sbjct 4401746 G--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAG 4401689 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 || ||||||| || || || | || | | |||||| ||| || | ||||| | | Sbjct 4401688 CTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCT 4401629 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAA 13158 |||||||| | ||| | ||| | || || || || ||||||| || ||||| Sbjct 4401628 TCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAA 4401569 Query 13159 ATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCAT 13218 ||||||||| || || ||||||| ||| || || || || ||||| || || || ||||| Sbjct 4401568 ATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCAT 4401509 Query 13219 AAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTC 13278 || |||||||| || | ||| ||||| | ||||| |||| | |||| || ||||| Sbjct 4401508 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACC---AGAAAAGATGCCTTC 4401452 Query 13279 AACTGCTGCAAACGCTATCAAC-CTTTCACCATACGTA-CTATTTTTACTCTCTATCCAC 13336 |||| ||||| ||| |||| | ||| ||||| ||| || ||| | | | ||||| Sbjct 4401451 CGCTGCAGCAAAGACTA-CAACACGTTCCCCATAGGTAGCTGCTTTGTC-CCCAATCCAG 4401394 Query 13337 TTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAA 13396 | |||||| | ||| | || || || ||| |||| || || || || | Sbjct 4401393 TGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGA 4401334 Query 13397 TAAtttttttCCTTACTG-TCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGA 13455 |||| || ||| | ||| || ||||| || || | || ||||||||| | || Sbjct 4401333 -AATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGA 4401275 Query 13456 ATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAAC 13515 ||| || |||||||| || |||||||| ||| | ||||| | || |||| |||||||| Sbjct 4401274 ATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAAC 4401215 Query 13516 TTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaa 13575 ||| | | ||| || | |||||| | || ||||| || ||||| || |||| || Sbjct 4401214 TTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAA 4401155 Query 13576 aGCAAGTATGTGCTTAATAAAttttttttC----GTTTTCTGACAACTTTAACCAATCTG 13631 | | || | || ||||| | | | || | ||| | | | ||| | Sbjct 4401154 AACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCC 4401099 Query 13632 GAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTAT 13691 || || || || | || |||||||| ||||||| || ||||| | |||||||||| Sbjct 4401098 AAATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTAT 4401039 Query 13692 ACATCATCCATATATC 13707 ||||| ||| ||||| Sbjct 4401038 ACATCTGCCAGATATC 4401023 >seq4087 Length=903614 Score = 125 bits (138), Expect = 6e-24 Identities = 205/292 (70%), Gaps = 10/292 (3%) Strand=Plus/Minus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 28058 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 28000 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAA 13539 ||| ||||| ||||| | || |||| | ||||||||| | ||||| || | || Sbjct 27999 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAA 27940 Query 13540 GTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttt 13599 |||||| || ||||| || || || || ||||| ||||| || | || ||||| | Sbjct 27939 GTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAATATAAAATA 27880 Query 13600 tttttC----GTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | || | ||| | | | ||| | ||| || || || | || |||| Sbjct 27879 TCTCTCCTCGGGCTTCAGGGA----TTCCCAGTGCTGAATGTCCTTGGACAGGTCCACCT 27824 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATC 13707 |||| ||||||| || ||||| | ||||||||||||||| ||| ||||| Sbjct 27823 CCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATC 27772 >seq10880 Length=11791330 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 13173 CTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTT 13232 |||||||||| || || || || || ||||| || || || |||||||| |||| || | Sbjct 10272721 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 10272780 Query 13233 TAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACG 13292 | | ||| |||||||||||||| || || || || || |||||||| || || ||||| | Sbjct 10272781 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 10272840 Query 13293 CTATCAACCTTTCACC 13308 | | || ||||| || Sbjct 10272841 CCACCACTCTTTCCCC 10272856 Score = 93.3 bits (102), Expect = 4e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||||| ||| ||||| || ||||||||||||||||| ||||| |||||| Sbjct 10261393 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 10261452 Query 12923 ATAAAATCGAAAGGATTTT 12941 |||||||| |||||||||| Sbjct 10261453 ATAAAATCAAAAGGATTTT 10261471 >seq1678 Length=10304083 Score = 82.4 bits (90), Expect = 7e-11 Identities = 79/99 (80%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 13421 ATATAAGTATCTATCAATAAG-CTATACATTTCTGAATGAATATTTTCCATCGCTATTTG 13479 || ||||| || || || ||| ||||||||||| ||||| || |||||||| || ||||| Sbjct 211311 ATGTAAGTGTCAAT-AAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTG 211369 Query 13480 GAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 ||| ||||| ||||| | || |||| | ||||||||| Sbjct 211370 GAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTC 211408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430922347047066