Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq667 122 8e-23 seq7011 120 3e-22 seq1330 102 7e-17 >seq667 Length=10875949 Score = 122 bits (134), Expect = 8e-23 Identities = 118/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||||| || ||||| || | ||||||||||| ||||||||| |||| ||||||||| Sbjct 10101626 GGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGATG 10101567 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || || || || || |||| || |||||||| ||||| || ||||| ||||| || || Sbjct 10101566 CCCCAAGCTGAGAACCACGACCCAGACATCAAGGAGCATGTGAACTCCCTGGGGGAGAAT 10101507 Query 128994 CTCAAAACGCTGCGTCTTCGACTGCGTCGCTG 129025 || || ||||| | || | ||||| ||||| Sbjct 10101506 CTGAAGACGCTCAGGCTGAGGCTGCGGCGCTG 10101475 Score = 82.4 bits (90), Expect = 7e-11 Identities = 56/63 (89%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 129104 AGGCGTTTACAAGGCCATGAGCGAGTTCGACATATTCATCAACTACATAGAATCATACAT 129163 |||||| ||||| |||||||| ||||| ||||| |||||||||||||||||| | ||||| Sbjct 10099230 AGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACATAGAAGCCTACAT 10099171 Query 129164 GAC 129166 ||| Sbjct 10099170 GAC 10099168 >seq7011 Length=47169369 Score = 120 bits (132), Expect = 3e-22 Identities = 179/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 5270 TCGGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATT 5329 |||||||| ||||| | ||| |||| | | |||| | | || |||||||| || Sbjct 6213745 TCGGTGTCATCCAAAGCTTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATG 6213686 Query 5330 AGCTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGC 5389 ||||| || || | || || || || || ||||| | || || || |||||||| Sbjct 6213685 AGCTGTGCAATTCGATCACCGTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGT 6213626 Query 5390 ACCACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAG 5449 || || || ||||| |||| || ||||| || || || ||||| || || || |||||| Sbjct 6213625 ACAACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAG 6213566 Query 5450 TGTTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTT 5509 ||||| | || | ||| || ||||| |||| | ||| || || |||| |||||| | Sbjct 6213565 TGTTTTGCAGCCAAGCCTGACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCT 6213506 Query 5510 ATCAGAAGGTCAGT 5523 ||| ||| ||| || Sbjct 6213505 ATCTGAATGTCCGT 6213492 >seq1330 Length=10395599 Score = 102 bits (112), Expect = 7e-17 Identities = 175/253 (69%), Gaps = 1/253 (0%) Strand=Plus/Minus Query 5272 GGTGTCGTCCAAGCGGTTAACCTCTTGAACTGCTGGGTGCGATATGCGTTCGCATATTAG 5331 |||||| ||||| | ||| |||| | | | || | | || ||||| || || || Sbjct 2358138 GGTGTCATCCAAAGCTTGAACTTCTTCTATTTCCGGATAAAAAATCCGTTCACAAATGAG 2358079 Query 5332 CTGAGCTATCCTGTCTCCCTTCTTAACCTCAAAGTCGCTGTTTCCGAAGTTAAACAGCAC 5391 ||| || || | || | ||| || || ||||| | || || ||||||||||| || Sbjct 2358078 CTGTGCAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTAC 2358019 Query 5392 CACCCCGACATTGCCTCGGTAGTCTTCGTCGATAACGCCAGCGCCCACGTCGATAAAGTG 5451 || || ||||| |||| || ||||| || || || ||||| || || || |||||||| Sbjct 2358018 AACACCAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTG 2357959 Query 5452 -TTTGACCGCAAGGCCGGAACGTGGTGCTATGCGTCCGTAGCAACCAGGTGGGAGCTTTA 5510 |||| || | ||| || |||| |||| | ||| || || |||| |||||| || Sbjct 2357958 TTTTGCAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTA 2357899 Query 5511 TCAGAAGGTCAGT 5523 || ||| ||| || Sbjct 2357898 TCTGAATGTCCGT 2357886 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447686410870960