Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq2220 98.7 7e-16 seq9111 82.4 5e-11 >seq2220 Length=7499480 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/187 (74%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 25781 TGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTT 25840 |||| ||||| || |||| |||||| ||||| || || || || || | ||| || |||| Sbjct 3702203 TGTATTCTGCCCCAAAATGCCTCCA-TGGAAGCCATA-ACTGGACCCAAGTC-CCTTCTT 3702259 Query 25841 CCCTGTGCTCAAAGCCCCTCT-TATCCAAAAAGTCTCTGGAACCATTGGC-GTCCCAGAT 25898 | ||| | | | |||| | ||||||||||||| ||| ||||| || |||||||| Sbjct 3702260 CTCTGGCCGGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTTGCAATCCCAGAT 3702319 Query 25899 CTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAG 25958 || || ||||| || |||||||| | |||||||| || ||| |||||||||| Sbjct 3702320 TTTCACTCCCTTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAA 3702379 Query 25959 CTCCGCC 25965 |||| || Sbjct 3702380 CTCCTCC 3702386 >seq9111 Length=11462142 Score = 82.4 bits (90), Expect = 5e-11 Identities = 109/150 (73%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 25506 GCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATG 25565 || |||||||| ||||| || ||||||||||||||| || || || || | |||||| Sbjct 5684287 GCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGCACACCTAGGCCCATG 5684228 Query 25566 TCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACA 25625 | | || || |||||||| ||||| || || ||||| || ||| || ||||| || Sbjct 5684227 T-CTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACCACATAGAACTGGCA 5684169 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 | || | ||| ||||| || || || || Sbjct 5684168 GAGGGCATGGCATGGAGGCAGTGCCATCAG 5684139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340090205333109