Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq5683 123 2e-23 seq2044 114 1e-20 seq3835 107 2e-18 seq7011 95.1 1e-14 seq6237 93.3 4e-14 seq5018 93.3 4e-14 seq2485 93.3 4e-14 seq888 87.8 2e-12 seq8115 84.2 2e-11 seq1330 84.2 2e-11 seq4803 82.4 7e-11 >seq5683 Length=19003911 Score = 123 bits (136), Expect = 2e-23 Identities = 166/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || |||| || |||||||||| ||||| || || || || || | ||| || || Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| ||||||||||| ||| |||| || | | ||||| || || || Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 ||||| || ||||| | |||||| || ||||| | | |||||| | | ||||| Sbjct 4210582 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4210641 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||| ||||||||||| || | || || |||||||||||||||||| || Sbjct 4210642 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTT 4210692 >seq2044 Length=20526591 Score = 114 bits (126), Expect = 1e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| |||||| ||||||| | || ||||| || |||||||| ||||| || Sbjct 13287285 ATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTT 13287344 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || ||||||||||| ||| |||||| | | || || |||| ||||| Sbjct 13287345 ATCTTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGAT 13287404 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || ||||| ||||||||||| Sbjct 13287405 GGTCTTGCCAGTGAGGGTCTTCACGAAGATCTGCAT 13287440 Score = 98.7 bits (108), Expect = 9e-16 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| || || || ||||| |||| |||||||||| ||| || || || || | ||| || Sbjct 13285942 TTAGACACCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTA 13286001 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || || ||| ||| ||||||||||| || ||||||| || || ||||| || Sbjct 13286002 GTCAGACAGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTC 13286061 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGAC 94932 ||||| || ||||| ||||| | || ||||||||||| Sbjct 13286062 AGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTTGAC 13286100 >seq3835 Length=881625 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| || || || || || | ||| || || Sbjct 142376 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 142435 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || ||| Sbjct 142436 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 142495 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| || || | ||||| ||||| || ||| |||||| | | || || Sbjct 142496 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142555 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 |||| |||||||| || || || || || ||||| ||||||||||| Sbjct 142556 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142602 Score = 104 bits (114), Expect = 2e-17 Identities = 169/242 (70%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 94766 TTAAAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGC 94825 |||| | || ||| || || |||| |||| |||| ||||| || || ||||| || Sbjct 141906 TTAAGAATTAACAG-CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGG 141964 Query 94826 ACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTT 94885 | ||| || || | |||| | ||| |||||||| || || ||||||| | || Sbjct 141965 ATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTC 142024 Query 94886 TGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTG 94945 ||||| || || || || |||||||| || | || || ||||| || ||| ||| Sbjct 142025 TGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTG 142084 Query 94946 TCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGC 95005 ||| | | || || |||| |||||||| || || || || || ||||| ||||||||| Sbjct 142085 TCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGC 142144 Query 95006 AT 95007 || Sbjct 142145 AT 142146 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| |||| ||||| || || ||||| || | ||| || || Sbjct 142148 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 142207 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | |||| | ||| |||||||| || || ||||||| | || ||||| || || || Sbjct 142208 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142267 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || |||||||| || | || || ||||| || ||| |||||| | | || || Sbjct 142268 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 142327 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||| ||||||||||| Sbjct 142328 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 >seq7011 Length=47169369 Score = 95.1 bits (104), Expect = 1e-14 Identities = 205/304 (67%), Gaps = 2/304 (1%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || ||||||| | ||| || ||| | ||| ||| ||||||||||| || |||| || | Sbjct 6213726 GAACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCAC 6213667 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 | | || | ||| | | || | || || || || || || || ||||| | Sbjct 6213666 CGTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTC 6213607 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTACTGCCAAGCCTG 43788 |||| ||||| ||||| || || || ||||| || || ||| | | |||||||||| Sbjct 6213606 TATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTG 6213547 Query 43789 ATCTGGCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTTTA 43848 | | | || || || |||||| || ||| | |||| | | ||||||||||| | Sbjct 6213546 ACCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA 6213487 Query 43849 CGAG-GCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGATCGTACCCG 43907 | || ||| | || | ||| ||| | |||| | ||| |||||||| ||||| || Sbjct 6213486 CAAGAGCTTTCTCC-ATAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCC 6213428 Query 43908 GCGG 43911 |||| Sbjct 6213427 GCGG 6213424 >seq6237 Length=16698259 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| ||| | | ||||| || || || ||||| || || Sbjct 3405925 ATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGGGATACCCTCCTT 3405984 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | |||||| | | | ||| |||| ||||| Sbjct 3405985 GTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGAT 3406044 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || ||||||||||||||||| Sbjct 3406045 GGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 3406080 >seq5018 Length=1154 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||||||||||||||| ||| ||| | | ||||| || || || ||||| || || Sbjct 699 ATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGGGATACCCTCCTT 640 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | |||||| || ||||| | | |||||| | | | ||| |||| ||||| Sbjct 639 GTCTTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTGACCTCAAGAGTGAT 580 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| || ||||||||||||||||| Sbjct 579 GGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 544 >seq2485 Length=14009840 Score = 93.3 bits (102), Expect = 4e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| |||| || || || || || | ||||||||| | ||||| | |||||| Sbjct 703661 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 703720 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 || |||||| || |||| || | ||||| || || || || || || ||||||| Sbjct 703721 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 703780 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || || |||||| | |||||| | | | ||| |||| ||||||||| | Sbjct 703781 GATCTTGGCTTTGACGTTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCT 703840 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 ||| || || || || ||| ||||||||||| Sbjct 703841 TCCTGTGAGGGTCTTTACAGAGATCTGCATG 703871 >seq888 Length=8072957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 94801 CAAG-TGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCA 94859 |||| || | |||||| |||||||| | || || || || ||| ||| |||| Sbjct 5993366 CAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCA 5993425 Query 94860 GCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAA 94919 | || || || ||||||| | |||||||||||| |||||||| ||||| || || | | Sbjct 5993426 GTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 5993485 Query 94920 TTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTC 94979 | || ||||| || | | || || | | | || || | | |||||||| || | Sbjct 5993486 TCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACTTTGAGGGTGATGGTCTTCC 5993545 Query 94980 CAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | ||||| ||||||| || |||||||| Sbjct 5993546 CCGTAAGGGTTTTCAGGAAAATCTGCAT 5993573 >seq8115 Length=33050683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/216 (68%), Gaps = 11/216 (5%) Strand=Plus/Minus Query 94792 TCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGA 94851 || |||||| | || | |||||| |||||||| | ||| || || ||| Sbjct 31332682 TCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACAT--------- 31332632 Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 | |||| ||| || || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 31332631 --CTTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 31332574 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||| | | || || |||| || || Sbjct 31332573 ATCCTGGATATTGGCCTTTACATTTTCTATTGTGTTCAAGGGTTCAACCTCAAGGGTAAT 31332514 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||| |||||||| || |||||||| Sbjct 31332513 GGTCTTCCCTGTAAAGGTTTTCACGAAAATCTGCAT 31332478 >seq1330 Length=10395599 Score = 84.2 bits (92), Expect = 2e-11 Identities = 208/308 (68%), Gaps = 7/308 (2%) Strand=Plus/Minus Query 43609 GATCTTCTTCCAGTTCAGGGTAAGATATCTTTTCACAAATGAGCTGGGCGATTCTGTCTC 43668 || ||||||| | ||| || ||| | ||| ||||||||||||||| || |||| || | Sbjct 2358121 GAACTTCTTCTATTTCCGGATAAAAAATCCGTTCACAAATGAGCTGTGCAATTCGATCAC 2358062 Query 43669 CCTGCAGCACGTAAAAAGTGTGCTTATCGTGGTTGAATAGCACCACGCCCACGTTTCCCC 43728 || || | ||| | | || | ||| || || || || || || ||||| | Sbjct 2358061 ACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTC 2358002 Query 43729 TATAGTCTTCGTCTATTACGCCCGCGCCTACGTCTATTCCGTGACGTAC-TGCCAAGCCT 43787 |||| ||||| ||||| || || || ||||| || || ||| | | ||||||||| Sbjct 2358001 TATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAAGCCAAGCCT 2357942 Query 43788 GATCTG-GCGGCCACCCTGCCATAATGTCCGTGAGGCACGGCTACCCGTATGTCCGTTTT 43846 || ||| | || || || |||||| || ||| | |||| | | ||||||||||| Sbjct 2357941 GA-CTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTT 2357883 Query 43847 TACGAG-GCTGTAGCCTTTGGGTTCTATGGCCAAATCTTGGGCGCTGTACAGAT--CGTA 43903 || || ||| | || ||| ||| | |||| | ||| |||||||| | |||| Sbjct 2357882 CACAAGAGCTTTCTCC-ACAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCCCGTA 2357824 Query 43904 CCCGGCGG 43911 || |||| Sbjct 2357823 GCCCGCGG 2357816 >seq4803 Length=30560297 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || ||||| || | || ||||||| | |||||||||||| |||||||| ||||| || Sbjct 28369844 TCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTA 28369903 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || | | || || | | | || || |||| ||||| Sbjct 28369904 TCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATA 28369963 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||||||||| || |||||||| Sbjct 28369964 GTCTTCCCCCTTAGAGTTTTCACGAAAATCTGCAT 28369998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448227133583880