Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4031 163 4e-36 seq2353 154 2e-33 seq2298 116 6e-22 >seq4031 Length=22628411 Score = 163 bits (180), Expect = 4e-36 Identities = 197/268 (74%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| |||| | | || || ||||| || || || || |||||||| || Sbjct 22119848 CGCTAAGCGTCACCGCAAGGTTTTGCGGGACAACATTCAGGGCATTACTAAGCCAGCCAT 22119789 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || ||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 22119788 CCGGCGCCTTGCTCGCCGCGGCGGTGTCAAGCGTATTTCTGGCCTTATCTATGAGGAGAC 22119729 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| ||||| | ||||| ||| ||| || | |||||| | || || || Sbjct 22119728 ACGTGGTGTTCTGAAGGTGTTCCTGGAGAACGTGATTCGTGATGCAGTTACTTACACGGA 22119669 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| |||||||| |||||||| || | |||||| | |||||||| |||| || || || Sbjct 22119668 GCATGCTAAACGCAAGACTGTAACAGCAATGGATGTGGTCTATGCGCTGAAGCGACAGGG 22119609 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | |||| ||||| || ||||| Sbjct 22119608 ACGCACTCTTTACGGTTTCGGTGGTTAA 22119581 Score = 150 bits (166), Expect = 3e-32 Identities = 192/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | | || || || || ||||||||||||||||||||||| | Sbjct 22027845 CGCCAAGCGTCACCGCA-AGGTGTTGCGCGACAATATCCAAGGAATCACCAAGCCAGCCA 22027787 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || ||||||||| | ||||| | ||||||| |||| Sbjct 22027786 TCCGGCGCCTGGCTCGCCGCGGCGGCGTCAAGCGTATTTCTGGCCTCATCTATGAGGAGA 22027727 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 ||| | || ||||| | || || | | || |||| |||||| || ||| || | Sbjct 22027726 CTCGCGGAGTGCTGAAGGTTTTTCTGGAAAATGTAATCCGCGATGCTGTCACCTACACGG 22027667 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| ||||| ||||| ||||| ||||||| | || || || | || || || | Sbjct 22027666 AGCACGCCAAACGCAAGACGGTCACAGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 22027607 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | | ||||| || || Sbjct 22027606 GACGCACTCTGTATGGCTTCGG 22027585 Score = 145 bits (160), Expect = 1e-30 Identities = 188/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 |||||||| ||||| | || || ||||||||||| || ||||| ||||| ||||| Sbjct 21943643 GCTAAGCGCCATCGTAAGGTACTCCGGGATAACATCCAGGGCATCACAAAGCCGGCTATT 21943702 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| ||||||| || ||||| |||||||| | || || | ||||||| || | | Sbjct 21943703 CGCCGTTTGGCTCGGCGCGGTGGCGTCAAGCGCATTTCCGGTCTCATCTATGAGGAAACT 21943762 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| ||||| | ||| | ||| |||||| | || ||| | ||| || ||| Sbjct 21943763 CGAGGTGTGCTGAAGGTGTTCTTAGAGAACGTTATTCGAGACGCTGTTACCTACACGGAG 21943822 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || || |||||||| |||||||| | || || || | |||||||| || Sbjct 21943823 CACGCCAAGCGCAAAACTGTCACAGCCATGGATGTAGTATACGCTCTAAAACGTCAGGGG 21943882 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 21943883 CGCACTCTGTATGGCTTCGG 21943902 Score = 145 bits (160), Expect = 1e-30 Identities = 191/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| |||||||| |||| | |||| |||||||||||||| || || ||||| || || | Sbjct 22043858 CGCCAAGCGTCACCGCAAAG-TCTTGCGAGATAACATCCAGGGTATTACCAAACCTGCCA 22043916 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| ||||| ||||| || ||||| |||||||| | |||||| | ||||||| |||| Sbjct 22043917 TCCGGCGTCTTGCTCGGCGCGGTGGTGTCAAGCGCATTTCTGGACTCATCTATGAGGAGA 22043976 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| | || || ||| ||| |||| ||| ||| | || || | Sbjct 22043977 CCCGCGGGGTGCTGAAGGTGTTTCTAGAGAACGTGATCCGTGACGCTGTTACTTACACGG 22044036 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| || || | |||||| | ||||| || | ||||| || | Sbjct 22044037 AGCACGCCAAGCGCAAGACCGTAACAGCGATGGATGTGGTCTACGCTCTCAAACGACAGG 22044096 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | || | |||| || || || Sbjct 22044097 GACGCACTCTTTACGGCTTCGG 22044118 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || |||| | | || || || |||||||| || ||||||||||| || || Sbjct 21861203 GCCAAGCGCCACCGCA-AGGTGTTGCGCGACAACATCCAGGGCATCACCAAGCCGGCCAT 21861261 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| |||||||| || ||||| || |||||| | ||||||| || |||| || |||| Sbjct 21861262 CCGGCGTCTGGCCCGGCGTGGAGGTGTCAAGAGGATCTCTGGTCTGATCTACGAGGAGAC 21861321 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| | || | ||| ||| |||| ||| ||| || |||||| || Sbjct 21861322 TCGCGGGGTGCTCAAGGTGTTTTTGGAGAACGTGATCCGTGACGCTGTCACCTATACGGA 21861381 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || || ||||| ||||| | ||||| | ||||| || | || || ||||| Sbjct 21861382 ACACGCCAAGCGCAAGACGGTCACTGCTATGGACGTGGTCTACGCGCTCAAGCGCCAAGG 21861441 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | ||||||| ||||| Sbjct 21861442 ACGCACCCTTTATGGCTTTGG 21861462 Score = 143 bits (158), Expect = 4e-30 Identities = 199/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| || || | | || || |||||||||||||| ||||| ||||| ||||| Sbjct 21866583 CGCCAAGCGCCACCGGAAAGTGCTGCGGGATAACATCCAAGGCATCACTAAGCCGGCTAT 21866524 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || || || ||| | |||||||| || || || |||| || ||| | || || |||| Sbjct 21866523 TCGGCGCCTTGCTAGGCGTGGTGGGGTTAAACGGATCTCCGGTTTGATTTACGAGGAGAC 21866464 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | |||| | ||| | || || ||| ||| |||| || || | |||||| || Sbjct 21866463 CCGAGGTGTTCTCAAGGTTTTTCTGGAGAACGTGATCCGGGACGCCGTGACCTATACGGA 21866404 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || || ||||||||||| |||||||| | || || || | || || ||||| Sbjct 21866403 GCACGCCAAGCGCAAGACTGTCACTGCCATGGATGTGGTTTACGCGCTCAAGCGCCAAGG 21866344 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAATCTTCTAATCA 16710 || | | || ||||| || |||| | || || ||| Sbjct 21866343 ACGCACTCTATACGGTTTCGGCGGTTAGTATTTTAGTCA 21866305 >seq2353 Length=2157725 Score = 154 bits (170), Expect = 2e-33 Identities = 190/260 (73%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| || |||| | || || || |||||||| || |||||||||||||| ||| Sbjct 1991834 GCCAAGCGCCACCGCAAAGTGCTGCGCGACAACATCCAGGGCATCACCAAGCCAGCCATC 1991775 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| || || || || ||||| |||| || | ||||||| |||| Sbjct 1991774 CGGCGCCTTGCTCGCCGCGGCGGCGTGAAGCGCATCTCCGGCCTCATCTATGAGGAGACC 1991715 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || || | ||| || ||| Sbjct 1991714 CGCGGGGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGGGACGCCGTGACCTACACGGAG 1991655 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| |||||| ||||||| | |||||||| |||| || || ||| Sbjct 1991654 CACGCCAAGCGCAAGACGGTCACCGCCATGGACGTAGTCTATGCGCTGAAGCGCCAGGGC 1991595 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | ||||||| || || Sbjct 1991594 CGCACCCTTTATGGCTTCGG 1991575 Score = 136 bits (150), Expect = 6e-28 Identities = 191/268 (71%), Gaps = 0/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1288542 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 1288601 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || || || || ||||| ||||||| | |||| || |||| Sbjct 1288602 CCGGCGCCTTGCCCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 1288661 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 1288662 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 1288721 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 1288722 GCATGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 1288781 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 || | | || ||||| || ||||| Sbjct 1288782 TCGCACCCTCTACGGTTTCGGCGGTTAA 1288809 Score = 132 bits (146), Expect = 8e-27 Identities = 186/261 (71%), Gaps = 0/261 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||||||||| || |||| || || || |||||||| || ||||||||||| || || Sbjct 1293164 CGCTAAGCGCCACCGCAAGGTGCTGCGTGACAACATCCAGGGCATCACCAAGCCGGCCAT 1293105 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || || || || || || || || ||||| ||||||| | |||| || |||| Sbjct 1293104 CCGGCGCCTTGCCCGCCGCGGCGGCGTGAAGCGCATCTCTGGCCTCATCTACGAGGAGAC 1293045 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| || |||| ||||||| ||| ||| |||| || ||| | ||| || || Sbjct 1293044 CCGTGGGGTGCTGAAAGTCTTCCTGGAGAACGTGATCCGGGACGCTGTGACCTACACGGA 1292985 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || || ||||| |||||| |||||||| | || || || |||| || || || Sbjct 1292984 GCATGCCAAGCGCAAGACGGTCACCGCCATGGATGTGGTTTACGCGCTGAAGCGCCAGGG 1292925 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | || ||||| || Sbjct 1292924 TCGCACCCTCTACGGTTTCGG 1292904 Score = 96.9 bits (106), Expect = 5e-16 Identities = 178/261 (68%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||| | || |||| | || || || || || || || |||||||||||||| || Sbjct 1245439 CGCAAAGTGCCACCGCAAAGTCCTGCGCGACAATATTCAGGGTATCACCAAGCCAGCCAT 1245498 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| || ||||| || ||||| || || ||||| |||| || | | || || |||| Sbjct 1245499 CCGACGCCTGGCACGGCGTGGAGGCGTTAAGCGCATCTCAGGCCTTATATACGAGGAGAC 1245558 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| | ||| | || | ||| || |||| ||||| | ||| || || Sbjct 1245559 GCGCGGAGTTCTTAAGGTGTTTTTGGAGAATGTGATCCGCGATGCAGTTACCTACACGGA 1245618 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| ||||| ||||||| | || || || | || || || || Sbjct 1245619 ACACGCCAAACGCAAGACAGTCACGGCCATGGACGTGGTTTACGCGCTCAAGCGCCAGGG 1245678 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 || | | ||||| || || Sbjct 1245679 TCGCACCCTCTATGGCTTCGG 1245699 >seq2298 Length=2461138 Score = 116 bits (128), Expect = 6e-22 Identities = 176/245 (72%), Gaps = 4/245 (2%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||||||||| || |||| | || || |||| ||||| || || ||||||||||| || | Sbjct 2439892 CGCTAAGCGCCACCGCAAGGTC-CTGAGAGACAACATTCAGGGCATCACCAAGCCTGCCA 2439950 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 | || ||||| ||||| ||||| || || ||||| ||||| | | | || || |||| Sbjct 2439951 TTCGGCGTCTAGCTCGGCGTGGCGGCGTTAAGCGGATCTCT-GCCTCATTTACGAGGAGA 2440009 Query 16551 TTCGTGATGT-TTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACC 16609 || | ||| | |||| | ||||| ||| ||| || | || || || ||| ||| Sbjct 2440010 CCCGCGGTGTGCTGGAAGGTGTTCCTGGAGAACGTGATTCGGGACGCAGTCACCTACACC 2440069 Query 16610 GAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAA 16669 |||||||| || || ||||| ||||| |||||||| | || || || | || || || Sbjct 2440070 GAGCACGCCAAGCGCAAGACCGTCACAGCCATGGATGTGGTGTACGCGCTCAAGCGCCAG 2440129 Query 16670 GGCCG 16674 || || Sbjct 2440130 GGGCG 2440134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79064746728069