Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq1989 145 8e-30 seq4087 105 7e-18 seq10880 98.7 1e-15 seq7448 87.8 2e-12 seq2274 82.4 8e-11 >seq1989 Length=5200062 Score = 145 bits (160), Expect = 8e-30 Identities = 515/807 (64%), Gaps = 14/807 (2%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | | |||| | |||| Sbjct 4401923 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCGACACCACTCCC 4401864 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||| | ||| ||| Sbjct 4401863 ATCCTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATA 4401809 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||||| |||||||| || || | | || | || || |||||||||| | Sbjct 4401808 TTCTCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGC 4401749 Query 21302 AATAATCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATC 21361 | ||| ||||| ||| | || || ||||| ||||| |||||||| || || Sbjct 4401748 ATG--TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATG 4401691 Query 21362 AATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATT 21421 | || ||||| | || | || | || | |||||| || || | | |||| Sbjct 4401690 AGCTTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATT 4401631 Query 21422 ATATTTATTATCCTAGATGTACTAGGGGGATACAAT--AATTGTTTAAACATCAAACATG 21479 | | |||| || | | || || | | || || ||||||| || | Sbjct 4401630 CTTCCTCTTATTCTC--TCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAG 4401573 Query 21480 CAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGG 21539 |||||||||| || ||||| ||||| | ||| || | |||||| ||||| || | || | Sbjct 4401572 CAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAG 4401513 Query 21540 GCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGC 21599 |||| | ||||| || || | ||| ||||| || ||||| || |||||| |||| Sbjct 4401512 GCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGC 4401456 Query 21600 CCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCC 21659 | || | |||||||| | || | ||||| || || |||| | |||| ||| |||| Sbjct 4401455 CTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCC 4401396 Query 21660 ATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAA 21719 | | ||||| | |||| | || | |||| || || ||||| || || || Sbjct 4401395 AGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGC 4401336 Query 21720 GATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAG 21779 || | || | | ||| ||||| |||||||||| ||| Sbjct 4401335 GAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAG 4401276 Query 21780 AATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAA 21839 ||||||| ||||| || || || || || || | ||||| | || |||| |||| Sbjct 4401275 AATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAA 4401216 Query 21840 CCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAA 21899 | || | |||| | |||||||| |||||||||| |||||||| || |||| | Sbjct 4401215 CTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGA 4401156 Query 21900 ATGCCAATATATTTTTTATAAAATATC 21926 | ||| | || |||||||| || Sbjct 4401155 AAACCAGAACATGGGATATAAAATCTC 4401129 >seq4087 Length=903614 Score = 105 bits (116), Expect = 7e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||||||||||||||||||| ||||| || || || || || || || ||||| | || Sbjct 28038 ACTATACATTTCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGC 27979 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | ||||| || |||||| | ||||||||||||||||||| ||||| Sbjct 27978 TTCTGTAATCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTTCATTTACTATGCCATC 27919 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATC 21926 || || ||||| || |||| | || ||||||||||| Sbjct 27918 GCTTGCTGCAAAGAAAGCCAGAACATGGAATATAAAATATC 27878 >seq10880 Length=11791330 Score = 98.7 bits (108), Expect = 1e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 21100 TTTATTCAGCTTTATAAAAATAT-TTATTTAAAAATCAGCATCTAATGAGAAAACATTAT 21158 ||||| || |||| || || | || |||||||||| ||||| || | ||| || |||| Sbjct 10261304 TTTATAGAGTTTTAAAACAAGAGGTTTTTTAAAAATCTGCATCCAAGGTGAAGACGTTAT 10261363 Query 21159 CTTCtttttttGACATAATTCCCATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAAT 21218 || ||| || ||||| | | | ||||| || ||||| ||| || || |||| Sbjct 10261364 CTGTGGTTTCTGCCATAACTGCAAAACGCTGATACTCCGAAACTCGTTTCTCAAAGAAAT 10261423 Query 21219 TTGTCTTTCCTTCCAATGATATAGATTCCATAAAATCAAATGGATTTTC 21267 |||| |||||||| || || || ||||||||||||||| |||||||| Sbjct 10261424 TTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAAGGATTTTC 10261472 >seq7448 Length=2529 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 || ||||| || |||||||| || | ||| ||| ||| | ||||||| | |||| Sbjct 1456 TTCATTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTTGACATCACTCCC 1397 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | ||||| || || || || || ||||||||||||| ||| ||| Sbjct 1396 ATCCTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATA 1337 Query 21242 GATTCCATAAAATCAAATGGATTTTC 21267 |||||||| |||||||| || || Sbjct 1336 TTCTCCATAAAGTCAAATGGGTTCTC 1311 >seq2274 Length=11109 Score = 82.4 bits (90), Expect = 8e-11 Identities = 117/165 (71%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 21766 ACTATACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGC 21825 ||||| || ||||||||||| |||||| | || || || || || || || || | Sbjct 4281 ACTATTTATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGT 4222 Query 21826 CTCTGAACATTGAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATC 21885 |||| | |||| || | |||| ||| |||||||||||| |||||| ||||| Sbjct 4221 TTCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATC 4162 Query 21886 ACTGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTC 21930 || || ||||| || |||| |||| ||||||||||| ||| Sbjct 4161 ACATGCTGCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTC 4117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531824784726920