Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq1845 127 1e-24 seq10880 122 6e-23 seq888 113 3e-20 seq4803 105 4e-18 seq5475 104 2e-17 seq4141 104 2e-17 seq3171 104 2e-17 seq3835 102 5e-17 seq9220 96.9 2e-15 seq8115 87.8 1e-12 seq5683 87.8 1e-12 seq3370 87.8 1e-12 seq1108 87.8 1e-12 seq998 87.8 1e-12 seq4692 84.2 1e-11 >seq1845 Length=8200691 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| |||||||| ||||| || |||||||| Sbjct 1736245 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGGTAGGGACAGTGGGAATCTCGT 1736304 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 1736305 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 1736339 >seq10880 Length=11791330 Score = 122 bits (134), Expect = 6e-23 Identities = 84/95 (88%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||||||||||||| || |||||||| Sbjct 2676932 AAGCCAGTTCCCTTGGCTGTGGTTTTGCTGGATAGTAGATAGGGACAGTGGGAATCTCGT 2676991 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2676992 TTATCCATTCATGCGCGTCACTAATTAGATGACGA 2677026 >seq888 Length=8072957 Score = 113 bits (124), Expect = 3e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||| || | ||||||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 5993361 CAAAACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 5993420 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 5993421 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 5993480 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||||| | || || || Sbjct 5993481 CTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACTTTGAGGGTGATGGT 5993540 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| | |||||||| ||| |||||||| ||| Sbjct 5993541 CTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATTTTT 5993577 >seq4803 Length=30560297 Score = 105 bits (116), Expect = 4e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 ||||| | ||||||||| |||||||||||| ||| | ||||||||| |||| |||| Sbjct 28369786 CAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTC 28369845 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| | || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 28369846 TTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 28369905 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||||| |||||| || | || ||||| Sbjct 28369906 CTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGT 28369965 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||| | | ||||||||||| |||||||| || Sbjct 28369966 CTTCCCCCTTAGAGTTTTCACGAAAATCTGCATTTT 28370001 >seq5475 Length=1581955 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||| ||||||||||||||||||| ||| |||| ||| ||||| || |||||||| Sbjct 342555 AAGCCTGTTCCCTTGGCTGTGGTTTTGCTGGATATTAGGTAGGGACAGTGGGAATCTCGT 342614 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||||| || Sbjct 342615 TCATCCATTCATGCACGTCACTAATTAGATGATGA 342649 >seq4141 Length=17607553 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||| ||||||| ||||||||| |||| | || Sbjct 16723032 CAACACAAGATGAAGAGTAGACTCCTTTTGACTATTGTAGTCAGACAAAGTACGTCCATC 16722973 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || || | ||| || | | || | ||||| || || Sbjct 16722972 TTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCGGAGCAGGAGGAATTCCTTCCTTCTC 16722913 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | |||| |||||| || | || || || Sbjct 16722912 CTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAACCTCGAGGGTGATGGT 16722853 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || ||||| | |||||||||||| |||||||| ||| Sbjct 16722852 CTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTTT 16722816 >seq3171 Length=2389652 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||| ||||||||||||||||||| || |||| ||| ||||| || |||||||| Sbjct 2002781 AAGCCCATTCCCTTGGCTGTGGTTTCACTGGATAATAGGTAGGGACGGTGGAAATCTCGT 2002840 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| || |||||||||||||||||| Sbjct 2002841 TCATCCATTCATGTGCATCACTAATTAGATGACGA 2002875 >seq3835 Length=881625 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| ||||| |||| || || || |||||| || || ||||| |||| Sbjct 142146 TACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAG 142205 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || |||| || Sbjct 142206 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 142265 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||| ||| || || ||||||||| | || || || | || | Sbjct 142266 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 142325 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || |||| ||| |||||||| |||||||| Sbjct 142326 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/232 (68%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| |||| |||| || || || ||| || || || ||||| |||| Sbjct 142374 TACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAG 142433 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | | || | || || | || || || ||||| || || | || || |||| || Sbjct 142434 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGG 142493 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 | | |||||| || ||| ||||| ||||||||| | || || || | || | Sbjct 142494 GAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCA 142553 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 | || | || || || || || |||| ||| |||||||| |||||||| || Sbjct 142554 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 142605 >seq9220 Length=42800024 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | || |||||| |||||||||||||||||| ||||||||| |||| | || Sbjct 9829980 CAACACGAGATAAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 9830039 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | ||| ||||| | || | ||||| || || Sbjct 9830040 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 9830099 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || | ||| ||||| | | ||||| |||| | || | || || || Sbjct 9830100 CTGGATCTCGGTCTTTACATTTTATATCGTATCCGAGGGTTCAGCCTCGAGGGTGATGGT 9830159 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||| ||| |||||||| || Sbjct 9830160 CTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 9830195 >seq8115 Length=33050683 Score = 87.8 bits (96), Expect = 1e-12 Identities = 148/214 (69%), Gaps = 13/214 (6%) Strand=Plus/Minus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||| ||||| ||||||| || Sbjct 31332679 CAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGACA-----------TC 31332631 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || || || || || ||||| || || | ||| ||||| | || | ||||| || || Sbjct 31332630 TTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATC 31332571 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCA-CTTTCAACTTCTAATGTAATAG 38283 | || || ||| ||||| | | || | || | |||||| || | ||||| | Sbjct 31332570 CTGGATATTGGCCTTTACATTTTCTATTGTGT-TCAAGGGTTCAACCTCAAGGGTAATGG 31332512 Query 38284 TTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || || |||||||||||||| |||||||| Sbjct 31332511 TCTTCCCTGTAAAGGTTTTCACGAAAATCTGCAT 31332478 >seq5683 Length=19003911 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||||| || |||||||||| || || ||| ||| || || || ||||| || || Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| ||||||||||| || || || || || | ||| Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| |||||| || ||||||| | || || | || || Sbjct 4210582 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4210641 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || ||||| |||| | ||| ||||| || |||||||||||| Sbjct 4210642 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTTT 4210692 >seq3370 Length=26952557 Score = 87.8 bits (96), Expect = 1e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||||||||||||||||||||||||||||| | ||||| |||| |||| |||||| || Sbjct 3587793 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACGTGTTGACTATTGGTCTCACG 3587734 Query 20008 GTAATATTTAGCCTTA 20023 | ||||||||| || Sbjct 3587733 CCAGTATTTAGCCATA 3587718 >seq1108 Length=15764245 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| ||||||||||| ||| |||||||||||||| ||||||||| |||| | || Sbjct 5636264 CAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATC 5636323 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | | || || | | || | ||||| || | Sbjct 5636324 TTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAATTCCTTCCTTAAC 5636383 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || || ||| ||||| | | ||||| |||||| || | || || || Sbjct 5636384 CTGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGT 5636443 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || | |||| ||||||| |||||||| || Sbjct 5636444 CTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5636479 >seq998 Length=12558390 Score = 87.8 bits (96), Expect = 1e-12 Identities = 79/95 (83%), Gaps = 7/95 (7%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG----GGGTAATCTCGTT 25957 || |||||||| |||||||||||||| | |||||||| |||| | | ||||||||| Sbjct 9390187 AACCCCGTTCCTCTGGCTGTGGTTTCG-TGGATAGTAGGTAGGGACAGTGGAATCTCGTT 9390245 Query 25958 AATCCTTTCATGCGC-GTCACTAATTAGATGACGA 25991 |||| ||||||||| |||||||||||||| |||| Sbjct 9390246 CATCCATTCATGCGCGGTCACTAATTAGAT-ACGA 9390279 >seq4692 Length=25524837 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/216 (69%), Gaps = 1/216 (0%) Strand=Plus/Plus Query 38105 CAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTC 38164 |||||| | ||||||||| |||||||||||||||||| ||||||||| | | | || Sbjct 22647601 CAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTCCATGCATC 22647660 Query 38165 GTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTC 38224 || | ||| || || ||||| || | ||| ||| | | || | ||||| || || Sbjct 22647661 TTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAGGAATTCCTTCCTTATC 22647720 Query 38225 CATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGT 38284 | || | ||| ||||| | | ||||| |||||| || | || || || Sbjct 22647721 CTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACATCGAGGGTGATGGT 22647780 Query 38285 TTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || ||||| | |||||||| ||| |||||||| || Sbjct 22647781 CTT-CCCGTAAGGGTTTTCATGAAAATCTGCATTTT 22647815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334900528561823