Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq1989 219 5e-52 seq4087 172 6e-38 seq1678 96.9 4e-15 seq2274 89.7 6e-13 >seq1989 Length=5200062 Score = 219 bits (242), Expect = 5e-52 Identities = 438/647 (68%), Gaps = 4/647 (1%) Strand=Plus/Minus Query 93060 GTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAGTCGGTATGTAAACCTTCGT 93119 ||||||| ||| | | | |||| |||| | ||| ||||| || |||||||| || | Sbjct 4401608 GTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCAT 4401549 Query 93120 CTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCC 93179 ||| || | |||||| || || | || || | |||||||||||||||||||| Sbjct 4401548 CTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCC 4401489 Query 93180 AAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAA 93239 | ||||| || |||||| ||||||||| | | |||||| | || ||||| | |||| Sbjct 4401488 AGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAA 4401432 Query 93240 TACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTT 93299 |||||| || | | || | || | ||||| | || |||||||| || | Sbjct 4401431 CACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCGCCT 4401372 Query 93300 TCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTC 93359 |||| | |||||| | ||||| || || || || | | || | | | | |||| Sbjct 4401371 TCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTCCCTTACTTTGGGATCTT 4401312 Query 93360 GTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGCAATTT 93419 |||||| || || || | | | ||||||| ||||||| | || ||||| ||||||| Sbjct 4401311 TTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTT 4401252 Query 93420 GGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGA 93479 |||| || ||||||| | ||||| || | ||| |||||||| | ||| ||| || | Sbjct 4401251 GGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTACATCGCTCCACCA 4401192 Query 93480 GATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAAT 93539 ||| |||| ||||| ||||| |||| |||| ||| ||| | ||| |||||||| Sbjct 4401191 AGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAAACCAGAACATGGGATATAAAAT 4401132 Query 93540 GTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGACTTCTT 93599 | |||| || || || ||||| | | | || || || || || || || | Sbjct 4401131 CTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCT 4401072 Query 93600 CGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAA 93659 | | ||||| || || ||||| || || || ||||| | ||| || || || || | Sbjct 4401071 CCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCCAGATATCATGGTACTCGG 4401012 Query 93660 TTGGAAATATGAC-AAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | || || ||||| |||||| ||||| | | | || | |||||| Sbjct 4401011 TGGGGAAGATGACAAAAACGGCAGGGGTTTTGTCTCAGCAGCGGCTC 4400965 >seq4087 Length=903614 Score = 172 bits (190), Expect = 6e-38 Identities = 251/352 (71%), Gaps = 2/352 (1%) Strand=Plus/Minus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 28065 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 28006 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 28005 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 27946 Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 || | |||||||| ||||| |||||| ||||||||| ||||||| | ||| ||| Sbjct 27945 CACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAATAT 27886 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGATAGATCTTTTGAAAGATCGA 93593 ||||| | |||| || || || ||||| | | || | || || || || || | Sbjct 27885 AAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGA-ATGTCCTTGGACAGGTCCA 27827 Query 93594 CTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT 93653 | || ||| | ||||| || || || || || || || ||||| | ||| || || || | Sbjct 27826 CCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCGTGGT 27767 Query 93654 ATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTC 93705 | | || | || |||||||| || ||||| ||| | || | ||| || Sbjct 27766 ACTCGATGAGGAAGATGACAAAGCGGCGGGGGTTTTCTCTCAGCAGCGGTTC 27715 >seq1678 Length=10304083 Score = 96.9 bits (106), Expect = 4e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 93134 TCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCA 93193 |||||| ||||| | || || | ||||||||||||||||||||| ||||| || ||| Sbjct 209219 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 209278 Query 93194 AAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 ||| ||| ||||| || || |||||||| || ||||| || || | |||||| Sbjct 209279 AAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCTACGACACGTTC 209331 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 93355 ATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGGACATTCTCCATTGC 93414 |||| |||||| || || || | ||| ||||||||||||||| | || ||||| || Sbjct 211304 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 211363 Query 93415 AATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCTTGAGAAAATCTCTC 93474 ||||||||| || |||||||| | ||||| || ||||| |||||||| ||||| ||| Sbjct 211364 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 211423 Query 93475 TAC 93477 || Sbjct 211424 CAC 211426 >seq2274 Length=11109 Score = 89.7 bits (98), Expect = 6e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 || |||||||| | || || | ||||||||||| || ||||| || | ||| || Sbjct 4274 ATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTA 4215 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 ||||| | ||||||| |||| || || | ||||||| ||||| ||||| ||||| Sbjct 4214 ATCTGAATTTCTTGAACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCT 4155 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCA 93550 ||||| ||||||| |||| |||||||| | | || ||| Sbjct 4154 GCAAAGAAAGCCAGAATATAGGATATAAAATATCTTTCCTCA 4113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556781217630920