Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5683 159 3e-34 seq6237 120 3e-22 seq5018 120 3e-22 seq10991 116 3e-21 seq2078 116 3e-21 seq7399 105 6e-18 seq3160 105 6e-18 seq2485 96.9 3e-15 seq1 91.5 1e-13 seq3700 82.4 6e-11 >seq5683 Length=19003911 Score = 159 bits (176), Expect = 3e-34 Identities = 174/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||| ||||| || ||||| || || | | || ||||| |||| ||||| || || | Sbjct 4210692 AAACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCC 4210633 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 || || ||| | || || ||||| ||||||||||||||||||||||| ||||| || Sbjct 4210632 CAGTGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGA 4210573 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 || || ||||| |||||||||||||||||| | || ||| |||||| |||| || || Sbjct 4210572 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 4210513 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||||| || ||||| |||||| | || | || ||||| |||| || || Sbjct 4210512 CAACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGG 4210462 >seq6237 Length=16698259 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 3406082 AGATGCAGATCTTTGTGAAGACACTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 3406023 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 3406022 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 3405963 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 3405962 AGCAGCATCTGCTACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 3405903 Query 22397 ACAT 22400 |||| Sbjct 3405902 ACAT 3405899 >seq5018 Length=1154 Score = 120 bits (132), Expect = 3e-22 Identities = 137/184 (74%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | || || || || |||||||||| || | ||| Sbjct 542 AGATGCAGATCTTTGTGAAGACACTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCA 601 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATC 22336 || ||| || ||| ||||| ||||||||||||||||||||||| ||||| || | Sbjct 602 GTGACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACC 661 Query 22337 AACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACA 22396 | || | ||| || |||||||||||||| | |||||| ||| || |||| || ||| Sbjct 662 AGCAGCATCTGCTACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACG 721 Query 22397 ACAT 22400 |||| Sbjct 722 ACAT 725 >seq10991 Length=13028613 Score = 116 bits (128), Expect = 3e-21 Identities = 149/204 (73%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 22217 AGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCA 22276 ||||||| || ||||| || || | | || || || |||| || || | || ||| Sbjct 8492932 AGATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTCGAGATCGAGCCCA 8492991 Query 22277 CCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGA-GGGTATTCCACCCGAT 22335 || ||| | | || ||||| ||||||||||||||||| |||||| ||||| || Sbjct 8492992 GTGACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGGTATCCCACCTGAC 8493051 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| ||| |||| || |||||| | |||||| |||||| |||| | ||| Sbjct 8493052 CAGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTAC 8493111 Query 22396 AACATTCAAAAAGAATCCACCATA 22419 ||||| || ||||| |||||| || Sbjct 8493112 AACATCCAGAAAGAGTCCACCCTA 8493135 >seq2078 Length=10708440 Score = 116 bits (128), Expect = 3e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| | ||||| | || | || || || || ||| ||||| || || ||| Sbjct 9965874 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 9965815 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 | ||| || || ||||| |||||||||||||| |||||||| ||||| || || Sbjct 9965814 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 9965755 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| |||||||| ||||| ||| | |||||| | |||| |||| || |||||| Sbjct 9965754 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 9965695 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGC 22432 || |||||| | |||||| | || | ||| ||| Sbjct 9965694 ATCCAAAAACAGTCCACCGTGCACCTGGTTCTGC 9965661 >seq7399 Length=1863 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 794 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 735 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 734 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 682 >seq3160 Length=4152596 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 |||||||||||||||||||| || ||||| || || || | ||| ||| |||| |||||| Sbjct 635279 AAAATTCAAGACAAGGAGGGCATCCCACCTGACCAGCAGCATCTGATACTTGCGGGCAAA 635338 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| | |||| |||| || |||||||| || ||||| ||||| Sbjct 635339 CAGCTGGAGGATGGCTGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCAC 635391 >seq2485 Length=14009840 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || | ||| || || | || || | ||| |||| |||| || | ||| Sbjct 703870 ATGCAGATCTCTGTAAAGACCCTCACAGGAAGAACCATCACCTTTGAGGTCCAGCCCAGT 703811 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| || | ||||| || || || ||||||||||| || ||||| || || Sbjct 703810 GACACCAGTGAAAACGTCAAAGCCAAGATCCATGACAAGGAGGGCATCCCACCTGACCAG 703751 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||| ||||||| ||||||||||| |||||| || ||| | || ||||| ||| Sbjct 703750 CAGCATCTGATATTTGTGGGCAAACAGTTGGAGGATGGCCACACTCTTTCAGATTATAAC 703691 Query 22399 ATTCAAAAAGAATCCACC 22416 || || ||||| |||||| Sbjct 703690 ATCCAGAAAGAGTCCACC 703673 >seq1 Length=43916225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 90/115 (78%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTAT-ATTTGCCGGCAA 22361 ||||||||||||||| |||| || | ||| || || || |||| || ||||| ||||| Sbjct 41890510 AAAATTCAAGACAAGTAGGGCATCCTACCTGACCAGCAGTGTCTGATAATTTGAGGGCAA 41890569 Query 22362 ACAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACC 22416 | || | |||||| |||||| |||| || |||||||| || ||||| |||||| Sbjct 41890570 ATAGCTGGAGGATGGCCGCACTCTCTCAGACTACAACATCCAGAAAGAGTCCACC 41890624 >seq3700 Length=12518110 Score = 82.4 bits (90), Expect = 6e-11 Identities = 71/88 (81%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 22321 GGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGC 22380 ||||| ||||| || || || ||||| |||||||||||||||||| | || ||| |||| Sbjct 9225251 GGTATCCCACCTGACCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGC 9225310 Query 22381 ACCGTCTCCGATTACAACATTCAAAAAG 22408 || |||| || |||||||| || |||| Sbjct 9225311 ACTCTCTCAGACTACAACATCCAGAAAG 9225338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419669515231645