Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq998 181 2e-40 seq225 122 1e-22 >seq998 Length=12558390 Score = 181 bits (200), Expect = 2e-40 Identities = 211/285 (74%), Gaps = 0/285 (0%) Strand=Plus/Minus Query 8891 AACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGTTGCGGTTTTCACGATG 8950 || ||||| |||||||| || || ||||| |||||||| | || || || | ||| Sbjct 2149416 AAGGGACAGCCCTTCACGTTATTGCAGATGAGAGACTGAATTGAGGCAGTGTTGATGATT 2149357 Query 8951 TCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGATGACG 9010 | ||||| || || || || || ||||| || |||||||| || || || || || || Sbjct 2149356 TGAAAACCCACTTCTCCACCAAAAGTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACA 2149297 Query 9011 TTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACCGAAG 9070 || |||| || ||||||||||| ||||| || || | || | ||| ||||||| ||| Sbjct 2149296 TTACCCATAAGTCCTTTCAAGGAGAACGGTGCTCCAACTTCTACCATGGTCTCACCAAAG 2149237 Query 9071 ATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTCGACG 9130 |||||| | ||||| || ||||| || | | | ||| || || || ||||| |||| | Sbjct 2149236 ATGGCATCTGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCACAGCATCGATG 2149177 Query 9131 TCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 || |||||||| ||||||||||| |||| || ||||| || ||| Sbjct 2149176 TCACCATAGAGTGCTTCCAACTCTGCAGACATTTCCTTTTCTCCT 2149132 Score = 179 bits (198), Expect = 5e-40 Identities = 174/224 (78%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9739 GTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGACC 9798 || || ||||||||||| ||||||||||| || || || ||||| || || ||||| || Sbjct 2147379 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACGTCGCACACT 2147320 Query 9799 CTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAAAC 9858 ||||||||||| | |||||| || ||||| |||||||| | ||| ||||| | |||||| Sbjct 2147319 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2147260 Query 9859 ACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATATGC 9918 || || | |||||| ||||| ||||||| || || |||| || | || | ||| | Sbjct 2147259 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 2147200 Query 9919 ACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAAT 9962 |||| || |||||||| ||||| |||||||| || || ||||| Sbjct 2147199 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAAT 2147156 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 10121 TCTTACCCCATGCCCCAATCCTGTCGTGAAAGCCGGTCCTCGCACCATATCGGTCCTAAA 10180 |||||||||||| |||| |||| | |||||||| || |||||| ||| ||| | || Sbjct 2146224 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 2146165 Query 10181 AAATTGGTGTGTAAAGTGTTGCCCGAAAAAAGCGAACATCAGGTTGGTGCCCTGGGGATC 10240 ||| || || || ||||| || | || || || ||||||| ||| |||||||||||||| Sbjct 2146164 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 2146105 Query 10241 GGGGATAAAGGTCCTCCGAATAAAAACTTTGTCCACAATCTGTGTTGAATCGGGCAGACG 10300 ||||| || | || | | || || ||| |||||||||| ||||||| || || | Sbjct 2146104 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAATCTCATTTGAATCAGGAAGCTG 2146045 Query 10301 CGCCTTACCTGA 10312 | ||||||||| Sbjct 2146044 CTTCTTACCTGA 2146033 Score = 122 bits (134), Expect = 1e-22 Identities = 117/150 (78%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 10387 TCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTCGTA 10446 ||||||||||| || | ||||| ||||||||| ||| || ||||| || | ||| ||| Sbjct 2145613 TCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGGTA 2145554 Query 10447 TAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAGAGC 10506 |||||||| || || || || ||||||||||| ||||||||||| || | ||||| Sbjct 2145553 TAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAGTT 2145494 Query 10507 GGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||||||||||| | || |||||| Sbjct 2145493 GGTGGACTGTCAATCAAATGTGATCTGGCT 2145464 Score = 96.9 bits (106), Expect = 5e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || || |||| | |||| || || ||||| |||||||||||| ||| | Sbjct 2144565 CTTACGTGTTGAGCAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATATTG 2144506 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| ||||| |||| ||||| ||||| || || || |||| ||||||||||| || Sbjct 2144505 GTCAAATCCCACACTCATACATACACCTCGGTTTTGACATGGGTAGGAACAGCAAGGATT 2144446 Query 10960 GGCTGCAATTTAA 10972 ||| ||||| || Sbjct 2144445 TGCTACAATTAAA 2144433 >seq225 Length=11895683 Score = 122 bits (134), Expect = 1e-22 Identities = 178/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Plus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || ||||||| || || | || || || || ||||| || ||||||||| Sbjct 918799 GTGGCCGTCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTCGGCTTCCAGTAC 918858 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 |||| || |||||| ||| | | ||| || || | |||||| |||||||| | ||| Sbjct 918859 TCCGGAGAACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCT 918918 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCC-AGTGTA 9111 || || ||||| || ||||| | ||| | ||||| | || | |||| || ||| Sbjct 918919 ATCATACTCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAA-GAAGCAGCCCAGGGTA 918977 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | || || | ||| ||||| || | |||||||| || || ||||||||||| Sbjct 918978 GAACTCCAACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTC 919037 Query 9172 ACCTACAAG 9180 |||||||| Sbjct 919038 TCCTACAAG 919046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723624570222200