Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_015049.1 Length=124335 Score E Sequences producing significant alignments: (Bits) Value seq5618 89.7 4e-13 seq3393 89.7 4e-13 >seq5618 Length=178934 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||||| ||||||||||| ||| | ||||| || | ||| || | | || | Sbjct 94595 CCTCATGTTGCACATGACAGGTGTATCTCTGCTCCTTTCCAGAAGGCACCACCACAGCCG 94654 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || || | | || Sbjct 94655 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCCGTGTCCTGAG 94714 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 94715 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 94774 Query 529 CCCAACA 535 |||| || Sbjct 94775 CCCAGCA 94781 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| | ||||| | | ||| || | | |||| Sbjct 30244 CCTCATGCTGCACATGACAGGTGTATCTCTGCTCCTCTCCAGAAGGCACCACCACAGCTG 30303 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || |||||||| || | || ||||| ||||| || | | |||| Sbjct 30304 CCCACTTCTGGAAGGTTCCATCCCCTGTAGGCCTGGTCTCCACGAGCTCTGTGTCCTCAG 30363 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | ||| |||| | || ||||| || | || || |||||||| |||||||| || Sbjct 30364 TTTGTTCCTCTCCATCCCGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 30423 Query 529 CCCAACATTTTAGTGTTACTTGACGGTCAG 558 |||| || | || || | | | |||||| Sbjct 30424 CCCAGCACCTCAGGGTGGCCTCATGGTCAG 30453 >seq3393 Length=863181 Score = 89.7 bits (98), Expect = 4e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 349 CCTCATGTTTTACATGACAGGTATATTTATGCTCTTTATGTGCAGGTACTTCTATGGCTG 408 ||||||| | ||||||||||| ||| |||||||||| | ||| || | | || | Sbjct 588167 CCTCATGCTGCACATGACAGGTGTATCTATGCTCTTTTCCAGAAGGCACAACCACAGCCG 588226 Query 409 CCCACTTCTGAAAAGTTCCATCTCCAGCTGGTCTGGTTTCCACCTGCCCCACCCCATCAG 468 |||||||||| || ||||||||||| || || ||||| ||||| || | | | || Sbjct 588227 CCCACTTCTGGAAGGTTCCATCTCCTGCAGGCCTGGTCTCCACGAGCTCTGTGTCCTGAG 588286 Query 469 TCAGTTGCTCTGCTCCCATGTGCCACGTTATGGTAATGTCCGCAGGATAGAAGCCAGTGG 528 | | | ||| | || ||||| || | || || |||||||| |||||||| || Sbjct 588287 TTTGGTCCTCCCCGTCCTGCTGCCAGGTCAGTGTGATCTCCGCAGGGTAGAAGCCCAGGG 588346 Query 529 CCCAACA 535 |||| || Sbjct 588347 CCCAGCA 588353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397691778029448