Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5683 145 5e-30 seq10991 120 2e-22 seq2044 118 7e-22 seq2485 111 1e-19 seq3 104 2e-17 seq6237 102 5e-17 seq5018 102 5e-17 seq2276 95.1 8e-15 seq3835 93.3 3e-14 seq3700 84.2 1e-11 >seq5683 Length=19003911 Score = 145 bits (160), Expect = 5e-30 Identities = 164/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| ||||| ||||| || || | || |||| Sbjct 4210476 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 4210535 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||||||||||| ||||||||||| || || |||||||| | || | ||||||||||| Sbjct 4210536 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 4210595 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||| || |||||| || || || | |||| || ||| || || | ||| ||| Sbjct 4210596 TTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATG 4210653 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| |||| ||| |||||||||||||||||||| || Sbjct 4210654 GTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 4210691 >seq10991 Length=13028613 Score = 120 bits (132), Expect = 2e-22 Identities = 145/194 (75%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||| | || || | || |||| ||||||||||| || |||| | Sbjct 8493125 TCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAGT 8493066 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCAC-CCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || || |||||||| | || | |||||||||||| ||| || |||||| | Sbjct 8493065 ATCAGACGCTGCTGGTCAGGTGGGATACCCCTCCTTGTCTTGAATTTTGGCTTTGAC--A 8493008 Query 34910 TGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTC 34967 | ||| | | |||| || ||| | |||| ||| ||||| || ||| |||| |||||| Sbjct 8493007 TTCTAAATGGTGTCACTGGGCTCGATCTCGAGGGTGATGGTCTTGCCCATGAGGGTCTTC 8492948 Query 34968 ACAAAGATCTGCAT 34981 |||||||||||||| Sbjct 8492947 ACAAAGATCTGCAT 8492934 >seq2044 Length=20526591 Score = 118 bits (130), Expect = 7e-22 Identities = 143/193 (74%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| |||||||| ||||||||||| Sbjct 13287250 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAG 13287309 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || ||||| ||||| || Sbjct 13287310 ATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGAC--AT 13287367 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | |||| || |||||| || | ||| ||||| || || ||||| ||||||| Sbjct 13287368 TCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCA 13287427 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 13287428 CGAAGATCTGCAT 13287440 Score = 105 bits (116), Expect = 4e-18 Identities = 142/193 (74%), Gaps = 6/193 (3%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| || ||| | || |||| ||||||||||| || ||||| Sbjct 13286375 TCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGTTT-CCAGCAAAG 13286433 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || | | |||||||| | | | || ||||||| || |||| ||||| || Sbjct 13286434 ATCAACCTCTGCTGGTCAGGGG--ATGCCTTCCTTGTTCCTGGTCTTTGCCTTGACACAT 13286491 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || || | ||||| || |||||| |||| ||| ||||| || || || || ||||||| Sbjct 13286492 TCTCGATGG-TTCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCA 13286550 Query 34969 CAAAGATCTGCAT 34981 | ||||||||||| Sbjct 13286551 CGAAGATCTGCAT 13286563 Score = 89.7 bits (98), Expect = 3e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || |||||||| | || |||||||| | ||| |||||||| ||||| ||||| || Sbjct 13285949 CCCCCCCTCAAGCGCAGGACCAAGTGCAGAGTGGACTCTTTCTGGATGTTGTAGTCAGAC 13286008 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 ||| | ||| |||| ||||||||||| || ||||| || | | |||||||| | || Sbjct 13286009 AGGGTGCGTCCATCTTCCAGCTGTTTCCCAGCAAAGATCAACCTCTGCTGGTCAGGAGGG 13286068 Query 34875 ACCCCCTCCTTGTC 34888 | || |||||||| Sbjct 13286069 ATGCCTTCCTTGTC 13286082 >seq2485 Length=14009840 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||| || ||||| | | |||| |||| |||||| || ||||| Sbjct 703680 TCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTCCAACTGTTTGCCCACAAAT 703739 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | ||||||||||| ||||| ||||||| | Sbjct 703740 ATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATGGATCTTGGCTTTGACGTTT 703799 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | | | |||| || || || || | ||| |||||| |||| ||||| ||||| ||| Sbjct 703800 TCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGGTCTTTACA 703859 Query 34971 AAGATCTGCAT 34981 |||||||||| Sbjct 703860 GAGATCTGCAT 703870 >seq3 Length=21509657 Score = 104 bits (114), Expect = 2e-17 Identities = 140/193 (73%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| || | || || || |||| ||||||||||| || |||||| Sbjct 6625584 TCTTTCTGGATGTTGCAGCCTGAGAGAGCGCGGCCATCCTCCAGCTGTTTGCCCGCAAAT 6625643 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || |||||||| | || | ||||||||| | ||| || ||||| || Sbjct 6625644 ATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGAC--AT 6625701 Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 || | | |||| || ||| || |||| ||| ||||| || || | ||| ||||||| Sbjct 6625702 TCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCTGCGAGGGTCTTCA 6625761 Query 34969 CAAAGATCTGCAT 34981 ||||||||||||| Sbjct 6625762 CAAAGATCTGCAT 6625774 >seq6237 Length=16698259 Score = 102 bits (112), Expect = 5e-17 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Plus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 |||| ||||| || || |||| |||| ||||||||||| ||||||| || || | Sbjct 3405899 ATGTCGTAGTCTGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGC 3405958 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCGA 34918 |||||||| | || | ||||||||||| ||| || |||||| || || || | Sbjct 3405959 TGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATCCTCATTGG 3406016 Query 34919 T-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 | |||| || || || || | || ||||| || ||||| || |||||||||||||||| Sbjct 3406017 TGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCT 3406076 Query 34978 GCAT 34981 |||| Sbjct 3406077 GCAT 3406080 >seq5018 Length=1154 Score = 102 bits (112), Expect = 5e-17 Identities = 135/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 34800 ATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGT 34859 |||| ||||| || || |||| |||| ||||||||||| ||||||| || || | Sbjct 725 ATGTCGTAGTCTGAGAGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGC 666 Query 34860 TGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT-ATCGA 34918 |||||||| | || | ||||||||||| ||| || |||||| || || || | Sbjct 665 TGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATCCTCATTGG 608 Query 34919 T-TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCT 34977 | |||| || || || || | || ||||| || ||||| || |||||||||||||||| Sbjct 607 TGTCACTGGGCTTGACCTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCT 548 Query 34978 GCAT 34981 |||| Sbjct 547 GCAT 544 >seq2276 Length=6341472 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || || | || |||| ||| Sbjct 2189102 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTCTAGTCTGAGAGATTGCGGCCATCCTCC 2189161 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||||| || |||||||| || | |||||||| || | | |||| |||||| Sbjct 2189162 GGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGGATGCCCTACTTGTCTTGG 2189221 Query 34893 ATCTTCTG-TTTGACGGATGCTA--TCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 || ||| | |||||| || || | | || | || ||| || || | ||| ||||| Sbjct 2189222 AT-TTCGGCTTTGAC--ATTCTCAGTGGTGTCCCTGGGCTCCACCTCAAGGGTGATGGTC 2189278 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||| |||| || ||||||||||||||||| Sbjct 2189279 TTGCCCATGAGGGTGTTCACAAAGATCTGCAT 2189310 >seq3835 Length=881625 Score = 93.3 bits (102), Expect = 3e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 142412 TCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 142471 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || ||||| || || || || || | Sbjct 142472 ATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTT 142531 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 142532 TCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 142591 Query 34971 AAGATCTGCATATT 34984 ||||||||||| || Sbjct 142592 AAGATCTGCATTTT 142605 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| | || |||| |||||||| || || ||||| Sbjct 142184 TCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAG 142243 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || | |||||||| | || | || || || || ||||| || || | Sbjct 142244 ATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTT 142303 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | |||| || ||| || || | ||| ||||| || || || || |||||||| Sbjct 142304 TCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACG 142363 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 142364 AAGATCTGCATA 142375 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || ||||||| | || |||| ||| | || || ||||| ||||| ||||| || Sbjct 141920 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 141979 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | || |||| |||||||| || || ||||| || || | |||||||| | || Sbjct 141980 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142039 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||| || || | | || | |||| || ||| || Sbjct 142040 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142099 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || | ||| ||||| || || || || |||||||| |||||||||||| Sbjct 142100 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 142147 >seq3700 Length=12518110 Score = 84.2 bits (92), Expect = 1e-11 Identities = 85/109 (78%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 34878 CCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACAT 34935 ||||||||||| ||| || |||||| || || || | |||| || ||| || | Sbjct 9224988 CCCTCCTTGTCTTGAATTTTGGCTTTGAC--ATTCTCAATGGTGTCACTGGGCTCGACCT 9224931 Query 34936 CGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||| ||| |||||||| |||||||| |||||||||||||||||||| || Sbjct 9224930 CGAGGGTGATGGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTT 9224882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324588365655624