Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq1989 289 3e-73 seq2631 161 1e-34 seq1678 116 4e-21 seq10880 111 2e-19 seq7448 105 8e-18 seq6459 98.7 1e-15 >seq1989 Length=5200062 Score = 289 bits (320), Expect = 3e-73 Identities = 634/939 (68%), Gaps = 22/939 (2%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || | || |||||||| Sbjct 4401918 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTG--TTGGACTCGACACCACTCCCATC 4401861 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || ||||| || |||||||| || || |||| | ||| ||| Sbjct 4401860 CTCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTC 4401806 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| |||||||| || | ||| | | | || | || || | ||| | Sbjct 4401805 TCCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCAT- 4401747 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 |||| || || ||| | | ||| ||| ||||| | | |||||||| || || | Sbjct 4401746 -GTCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGC 4401688 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATA-TAAT 18908 || ||||| | || || || || ||||| |||||||| || || | ||||| | | Sbjct 4401687 TTCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCAT-TGATAATTCT 4401629 Query 18909 AGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 | | ||| || || || || | || || || ||||||| || ||||| Sbjct 4401628 TCCTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAA 4401569 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||| |||| ||||| |||| ||| || | |||||| ||||| || | |||||||| Sbjct 4401568 ATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCAT 4401509 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 |||||||| ||| || | ||||||||| || ||||| | ||||||||| || ||||| Sbjct 4401508 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTC 4401452 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTT 19148 |||| ||||| | || | | ||| ||||| |||| | || | |||||| | Sbjct 4401451 CGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTG 4401392 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || |||||||| ||| ||| || ||||| ||||| || || || | ||| | || | Sbjct 4401391 CAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGA--AGCGA 4401334 Query 19209 CATACGCT--CATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 || | || | | | |||||| | || | || || | ||||| |||||| | ||| Sbjct 4401333 AATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 4401274 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 || || ||||| || || || || || || | ||||| | |||||||| | ||| ||| Sbjct 4401273 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 4401214 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | | ||| || ||||| ||| |||| ||||| |||||||| ||| |||| || Sbjct 4401213 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAA 4401154 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAAT 19445 | | ||||| ||||||| | | || || | | || | | ||| ||| | ||| Sbjct 4401153 ACCAGAACATGGGATATAAAATCTCTCTCCTC-GGGCTTCAGGGATTCCCAGTGCCAAAT 4401095 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 || || || | || || || || | ||||| || ||||| || || || |||||||| Sbjct 4401094 GTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACAT 4401035 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | || | | || || || ||||| Sbjct 4401034 CTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 4400996 >seq2631 Length=7319754 Score = 161 bits (178), Expect = 1e-34 Identities = 295/426 (69%), Gaps = 6/426 (1%) Strand=Plus/Minus Query 18961 CATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAA 19020 || ||||| | ||| |||| ||||| || || || || | |||||| |||||||| | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 19021 CCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAAT 19080 ||||||||||||||| ||| | | ||||||||| ||||| || ||||||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 19081 ATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGA 19140 | | ||| ||| ||||| || | | | |||||||| || |||| || || | Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||| || ||||| | |||||||| || ||||| |||||||| | || | ||| Sbjct 2078829 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 2078771 Query 19201 AATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATT 19260 || ||| | | || | |||||||| || || || || | | ||| | || Sbjct 2078770 AAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATG 2078713 Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTG-CTTCTGTTAT 19319 || ||||| || |||||| |||| || || || || ||||| || | |||||| || Sbjct 2078712 TCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTGTAAT 2078653 Query 19320 CTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTAT-TCCATCACTAGCTG 19378 ||| | || || | || | || ||||| ||||||| ||||| ||||||| ||| Sbjct 2078652 CTG-AATTTTCTGAACAAATTGTCCACCAAGTTTTCATCCACTATCCCCATCACATCCTG 2078594 Query 19379 CAAAAA 19384 |||||| Sbjct 2078593 CAAAAA 2078588 >seq1678 Length=10304083 Score = 116 bits (128), Expect = 4e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| ||||| || || | |||||| |||||||| | |||||||||||||||| ||| | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || || |||||||| || ||||| ||||| ||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 19103 CAAC 19106 | || Sbjct 209319 CTAC 209322 >seq10880 Length=11791330 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18985 TCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttttt 19044 || ||||| || || | |||||| ||||| || | || ||||| || ||||| || ||| Sbjct 10272723 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 10272782 Query 19045 AACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCA 19104 | ||||||||||| |||||| ||||| || ||||| || |||||||| || ||||| || Sbjct 10272783 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 10272842 Query 19105 ACTAGTCTTTCTCC 19118 || | |||||| || Sbjct 10272843 ACCACTCTTTCCCC 10272856 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 18673 TGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCC 18732 ||||| || | ||||| ||| ||||||||||| |||||||| ||||| || || |||| Sbjct 10261393 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 10261452 Query 18733 ATAAAATCAAATGGATTTT 18751 ||||||||||| ||||||| Sbjct 10261453 ATAAAATCAAAAGGATTTT 10261471 >seq7448 Length=2529 Score = 105 bits (116), Expect = 8e-18 Identities = 112/146 (77%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| || ||| ||||||| | ||||||||||||| || || || ||| |||||||| Sbjct 1451 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCT--GTTGGACTTGACATCACTCCCATC 1394 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| ||| | ||||| || |||||||| ||||| ||||| || | ||| ||| Sbjct 1393 CTCTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTTCCTTCCAGTGAAATATTC 1334 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 |||||||| |||||||| || | ||| Sbjct 1333 TCCATAAAGTCAAATGGGTTCTCTAC 1308 >seq6459 Length=15015882 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||||||||| | ||| ||| |||| || | ||| || |||| Sbjct 12328824 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 12328765 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | |||||| || |||||||| || |||||||| ||||||||||| | | || Sbjct 12328764 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 12328705 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTT 47206 | || | || ||||| || |||||||||| ||| || Sbjct 12328704 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTT 12328668 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || || || || || ||||| || || Sbjct 12325967 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATGGAC 12325908 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || |||||||| || ||||||||||| | |||| | ||| || Sbjct 12325907 TCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAACTG 12325848 Query 47448 TTTCTTACTCCATA 47461 ||||||| ||||| Sbjct 12325847 TTTCTTATACCATA 12325834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562028467626120