Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq1989 219 5e-52 seq4087 140 4e-28 seq2631 132 6e-26 seq10880 111 2e-19 seq2274 102 1e-16 seq7448 82.4 9e-11 >seq1989 Length=5200062 Score = 219 bits (242), Expect = 5e-52 Identities = 327/460 (71%), Gaps = 7/460 (2%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||||||||| |||||||| ||||||| ||| || | |||||| |||||||| | Sbjct 4401576 CAAGCAAAATCACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGG 4401517 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | |||| ||| || | ||| ||||| | ||||||| | |||||||||| Sbjct 4401516 CCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA-- 4401459 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTA--TAATCAG 37353 | ||||| |||| ||||| |||||| |||| | || | || | | || | || Sbjct 4401458 -TGCCTTCCGCTGCAGCAAAGACTACAACACGT-TCCCCATAGGT-AGCTGCTTTGTCCC 4401402 Query 37354 AAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTT 37413 |||||| | | |||||||||| || ||||| || |||||||| || | Sbjct 4401401 CAATCCAGTGCAAGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCAT 4401342 Query 37414 TTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACA 37473 | ||| |||| | || ||| |||| |||| ||||| ||||| || |||||||||| Sbjct 4401341 TGAAGCGAAATTCCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACA 4401282 Query 37474 TTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATA 37533 || |||| || || ||||| || || || || || ||| | ||||| | ||||| | | Sbjct 4401281 TTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCA 4401222 Query 37534 ATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTG 37593 ||||| || | | | | || | |||||| |||| ||||| |||||||| ||| Sbjct 4401221 CCTGAACTTCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTA 4401162 Query 37594 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATC 37633 |||||||| | ||||||| |||||||| ||| || || Sbjct 4401161 CAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTC 4401122 >seq4087 Length=903614 Score = 140 bits (154), Expect = 4e-28 Identities = 150/196 (77%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 37439 ATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGC 37498 |||| |||| ||||| ||||| || | ||||||||||||||| || || ||||| || || Sbjct 28065 ATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGC 28006 Query 37499 TATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCT 37557 || || || ||||| ||||| | ||||| | |||| ||||| || | ||| | || Sbjct 28005 AATTTGGAAGCCATAGAAACAGCGGGCTTCTG-TAATCTGAACTTCTTGGCTAAATCGCT 27947 Query 37558 TAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTA 37617 | ||||||||||| ||||| ||||| || |||||||||||||| ||||||| || Sbjct 27946 CCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAATA 27887 Query 37618 TAAAATGTCTTTCATC 37633 |||||| ||| || || Sbjct 27886 TAAAATATCTCTCCTC 27871 >seq2631 Length=7319754 Score = 132 bits (146), Expect = 6e-26 Identities = 309/452 (68%), Gaps = 12/452 (3%) Strand=Plus/Minus Query 37176 CATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAAT 37235 || ||||| | ||| |||||||| ||||| || || || | |||||| ||||| || | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 37236 CCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAA 37295 || ||||| | ||| ||| | | ||| ||||| ||||||||| ||||||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 37296 ATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGT-TGAACTATAATCAGA 37354 | | ||| ||| ||||| ||| ||| |||| || || | || | || Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTC-CC 2078831 Query 37355 AATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTT 37414 |||||| |||| ||||||| || ||||| | |||||| |||| || || Sbjct 2078830 AATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTCCAATGGCATT 2078772 Query 37415 TAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACAT 37474 |||||||| | |||||| ||||| ||| || || ||||| || | ||||| || Sbjct 2078771 GAAGAGAAATTCCCTTTCTTTGTTATCT-TTA-ATGTGTGTCAATAAGGAGACTATTTAT 2078714 Query 37475 TTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAG-CTTCAGATA 37533 ||||| || || ||||| |||| || || || |||||||| || | ||| | || Sbjct 2078713 GTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTG-TA 2078655 Query 37534 AT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTAT-CCCATCACTAGC 37591 || |||| | | || ||| | | | |||||||||| ||||| |||||||| | Sbjct 2078654 ATCTGAATTTTCTGAACAAA-TTGTCCACCAAGTTTTCATCCACTATCCCCATCACATCC 2078596 Query 37592 TGCAAAGAAAGCAAGAACATATTTTATAAAAT 37623 ||||| ||||| |||| ||| |||||||| Sbjct 2078595 TGCAA--AAAGCCAGAATATAGGATATAAAAT 2078566 >seq10880 Length=11791330 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||||||||| | |||||| || | Sbjct 10272721 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 10272780 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 10272781 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 10272840 Query 37318 CTAC 37321 | || Sbjct 10272841 CCAC 10272844 >seq2274 Length=11109 Score = 102 bits (112), Expect = 1e-16 Identities = 149/207 (72%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 37429 tttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATAT 37488 |||||| ||||| | || | || ||||| || | ||||| || ||||| || || | Sbjct 4316 TTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTATGTCAGAATGTATGT 4259 Query 37489 TTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAAT-TGAACATCGTTA 37547 |||| |||| || || || ||||| || || | ||| | |||| |||| || | | Sbjct 4258 TTTCTGTAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTG-TAATCTGAATTTCTTGA 4200 Query 37548 AAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGA 37607 | ||| | | |||||||||| ||||||||||||| |||||||||||||| ||| Sbjct 4199 ACAAATTGTTCCACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAGA 4140 Query 37608 ACATATTTTATAAAATGTCTTTCATCA 37634 | ||| |||||||| |||||| ||| Sbjct 4139 ATATAGGATATAAAATATCTTTCCTCA 4113 >seq7448 Length=2529 Score = 82.4 bits (90), Expect = 9e-11 Identities = 76/94 (81%), Gaps = 2/94 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | ||||| || || |||| |||| || || || || |||||||||| Sbjct 1406 CATCACTCCCATCCTCTGATACTCGCCTACTC-TCTTCTCAAAGAAGTTAGTCTTTCCTT 1348 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATT 36964 | ||||| ||||| |||||||| |||||||| || Sbjct 1347 CCAGTGAAATATTCTCCATAAAGTCAAATGGGTT 1314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592232150525320