Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq9111 120 2e-22 seq2220 120 2e-22 seq5463 118 9e-22 seq8779 105 5e-18 seq6570 95.1 1e-14 seq5102 82.4 6e-11 seq3259 82.4 6e-11 >seq9111 Length=11462142 Score = 120 bits (132), Expect = 2e-22 Identities = 125/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5684302 AGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 5684243 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || || |||||||| ||||| || || ||||| | || | Sbjct 5684242 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 5684183 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 || || ||||| || | || ||||| ||||| || ||||| || Sbjct 5684182 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 5684139 >seq2220 Length=7499480 Score = 120 bits (132), Expect = 2e-22 Identities = 397/580 (68%), Gaps = 43/580 (7%) Strand=Plus/Plus Query 29792 GCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGA 29851 ||||| | ||||| || || | ||| || ||||| | || || ||||||| ||| | Sbjct 3701823 GCTGAATTTTCAGTGGCTCGATGTGTTC-AGGTAAATATGTGCATCTCCCAAGGTTGTGT 3701881 Query 29852 CAAACTCTCCCGG--TTCTAGCCCGGTGAC-GTGAGCCATCATGTACGTGAGGAGAGAGT 29908 |||| || || | ||| ||||||||| ||| || |||| | | ||| | || | || Sbjct 3701882 CAAAGTCAACCTGGCTTCAGGCCCGGTGAATGTGCGCAATCACGCATGTG-GCAGGGCGT 3701940 Query 29909 AGCTGGCG-ATGTT-AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA-GCT 29965 |||||||| ||||| ||| | || || |||| ||||| || || ||||||| | ||| Sbjct 3701941 AGCTGGCGGATGTTTAAACGCCACACCTGGCCC-ATGTCTCC-GA--TCTGGTACACGCT 3701996 Query 29966 GACACGAGAGCTCTCC-GTCGCTCAC---GTAA--AACTGACACATGGTGTGGCACGGAG 30019 | || ||||| | || ||| || | ||||| || | || ||||| |||| Sbjct 3701997 GCG--GACAGCTCAGCTGTTCACCACATTGTGAGGAACTG-CAGAGGGCATGGCATGGAG 3702053 Query 30020 GAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGC--GCACACGATGATGCGCCT 30074 | | ||||| |||| | |||| || ||||| || || |||||| | || Sbjct 3702054 GCAT-GCCATCAGAGGAGGATTCTCTTCGGAATTCCAAGCCAGCGATGGATGATTCTTCT 3702112 Query 30075 GTCTTCTGG----GTTGTTCCT-GATGAGGTCCACGGCG-TTTTGCAGCTGATCCACCCC 30128 ||| || || |||| || | ||| ||| | | |||||||| | || || || Sbjct 3702113 GTCGTCAGGAAGCGTTGGTCTTTGATTGTGTCAATCACTCTTTTGCAGTTTGTC-ACTCC 3702171 Query 30129 CATCCCCGAGT-AGTCTGC--CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTG 30185 | || || | | |||| || ||| || |||| ||||| || ||||||||||| || Sbjct 3702172 CTGTCCTGAATGAATCTGATTCCACAT-TCTCTGTATTCTGCCCCAAAATGCCTCCA-TG 3702229 Query 30186 GAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAAGCCCCTCTTGTCCA 30244 ||| || || || || |||| ||| || ||||| ||| | ||| ||| |||||| Sbjct 3702230 GAAGCCATA-ACTGGACCCAAGTC-CCTTCTTCTCTGGCCGGAGAACCCCAGGCTGTCCA 3702287 Query 30245 AAAAGTCTCTGGAACCGTTGGC-GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTG 30303 ||||||||| ||| || || || |||||||| || || ||||| || |||||||| Sbjct 3702288 AAAAGTCTCGGGATCCATTTGCAATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTA 3702347 Query 30304 GAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30343 | |||||||| || ||| |||||||||| |||||||| Sbjct 3702348 GCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCA 3702387 >seq5463 Length=20712753 Score = 118 bits (130), Expect = 9e-22 Identities = 185/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 3580557 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3580498 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 3580497 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 3580438 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | |||| | ||| | || | | | || || | | Sbjct 3580437 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCACTCC 3580379 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 3580378 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 3580326 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 3580325 ACAGCGACGATGCAGTTTAG 3580306 Score = 109 bits (120), Expect = 4e-19 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || | || |||||||| |||| || || || | | Sbjct 14442909 ATGAGCTCCTTGTGGAGGTTCCTTGGGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 14442850 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 14442849 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 14442790 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 || || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 14442789 GTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 14442731 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 | ||| | |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 14442730 TGA-----GCA-GTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 14442678 Query 112318 ACGGCCACGATACCGTTCAG 112337 || || ||||| | ||| || Sbjct 14442677 ACAGCGACGATGCAGTTTAG 14442658 >seq8779 Length=12928400 Score = 105 bits (116), Expect = 5e-18 Identities = 180/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || ||| |||| |||| || || | || | Sbjct 5237499 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGTTGAGAACTAAATTAATTGTATCCTT 5237440 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 5237439 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 5237380 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| | | |||| | ||| | || | || || || | Sbjct 5237379 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAACACCTGAATTCATTCC 5237321 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACA 112318 | || || |||| ||||| || || || || ||||||||||||| | | ||| Sbjct 5237320 AGAG------CGGCGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 5237267 Query 112319 CGGCCACGATACCGTTCAG 112337 | || ||||| | ||| || Sbjct 5237266 CAGCGACGATGCAGTTTAG 5237248 >seq6570 Length=23051202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 15031352 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15031293 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15031292 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15031233 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 15031232 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15031201 >seq5102 Length=86132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 112093 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 112152 || || || || || || ||||||| |||| || || || || ||| || || || | Sbjct 59075 GGAGGTTCCTTGAGTTCTCTGCTGAAAACTAAATTAATTCTATCCTTCAAAGATCGATCC 59134 Query 112153 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 112212 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 59135 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 59194 Query 112213 ACTGAAGA 112220 |||||||| Sbjct 59195 ACTGAAGA 59202 >seq3259 Length=27333823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 112102 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 112161 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 16203140 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 16203081 Query 112162 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 112209 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 16203080 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 16203033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408560663351309