Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq9220 302 5e-77 seq2763 187 3e-42 seq2442 114 1e-20 seq3590 105 8e-18 seq2 84.2 3e-11 >seq9220 Length=42800024 Score = 302 bits (334), Expect = 5e-77 Identities = 662/986 (67%), Gaps = 13/986 (1%) Strand=Plus/Minus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 || ||| || |||| ||| |||| ||| || | |||||| || |||| || ||||| || Sbjct 29434332 CAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAACTTATTGGC 29434273 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| || | || ||||||| || ||| || | || || | ||| || Sbjct 29434272 AAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATGCACAC 29434216 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || || | ||| || ||||| | || || || | || ||||| || Sbjct 29434215 CGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACATCACCCTC 29434156 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 |||| |||||||| ||||||||||| | || |||||||| || ||||| || | Sbjct 29434155 AAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCGTACTTATG 29434096 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 | | || | || || || | || || | ||| | ||||||||| || | || Sbjct 29434095 GCTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCAGAGATACTC 29434036 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| | | ||| ||||| |||| | ||| | | | || Sbjct 29434035 ATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGATGTTTTCATTCTGTAG 29433976 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || | || |||||||| || ||||| || || | |||| | Sbjct 29433975 TACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAAAAGCGGTGT 29433916 Query 160472 ---GGGTATAGGCGGCGTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAG 160528 | | ||| || | |||| | || ||||| | || | ||| || || | Sbjct 29433915 TTCGAGCGGAGGAAGCAT---TTTGACAGTCCCTGTGTTTGTCAGCTTTCCATTAACGAC 29433859 Query 160529 CGCGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACT 160588 | | | ||||| |||||||| | || || | |||||| | ||||| || || || Sbjct 29433858 CTCATACCGCTTTTTCCACCTTTCTTCTTTATGGGATGGCATCCTCTCCGTTTCCAGGCT 29433799 Query 160589 GTTGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAA 160648 ||| | || | | | || |||| | |||| || |||||||| || || | ||||| Sbjct 29433798 GTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAATAGGAAA 29433739 Query 160649 GTCGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCT 160708 || |||| || | ||||||| ||||||||| || || |||| | | |||||| | Sbjct 29433738 ATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGAGGTCCTT 29433679 Query 160709 CATGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTT 160768 |||||| || | || ||||| || || ||||| || || || || || |||| | | Sbjct 29433678 CATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCTCCAATCG 29433619 Query 160769 ACTGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAG--AAAGAAC 160826 |||||||||||||| ||| |||||| || |||| |||| ||| | ||| ||| | Sbjct 29433618 GCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTG-CAGCTAAATAGG 29433560 Query 160827 ATCTTATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCC 160886 | | || | ||| |||||| || | |||||| | ||||||||| ||||||||| Sbjct 29433559 A-ATCCTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATAGATGGCC 29433501 Query 160887 CTGAGCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGA 160946 || |||| ||| || | ||| || ||||| ||||| | ||| ||||| || ||||| ||| Sbjct 29433500 CTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGCTATTGGA 29433441 Query 160947 AACTCGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAA 161006 ||||| | ||| || ||| |||| | | || || || ||||||| ||| || Sbjct 29433440 AACTCTGCCTCTTCTTTACTAAGGGGTTCTACAATATATTTGCGTCTCTTGATGAAAGAA 29433381 Query 161007 TCACAATCCCGCGTCATGTTGATATA 161032 ||| || | |||||||| ||||| Sbjct 29433380 GTACAGTCACTGGTCATGTTTATATA 29433355 >seq2763 Length=6127229 Score = 187 bits (206), Expect = 3e-42 Identities = 232/318 (73%), Gaps = 0/318 (0%) Strand=Plus/Minus Query 168155 AGTCAAGCACGTTTTTCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAA 168214 ||| | ||| | | |||| || ||||| || || || || || |||||||| |||||| | Sbjct 1488126 AGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGACACATGTA 1488067 Query 168215 GCAGCCTTCGTCCTCCACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAA 168274 || ||||| ||||||| |||| ||||||| || || | |||| |||| |||| |||| Sbjct 1488066 ACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGAGTCCCAG 1488007 Query 168275 CTGCGTTATGTTCACACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCT 168334 ||| || ||||| | || ||||| | ||| || | || || || ||||||||||| Sbjct 1488006 CTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGTTCTCGCT 1487947 Query 168335 GAAGGTGGCCATGTTCTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAAC 168394 ||||||| ||||||| || ||||| || || | |||||||| || || ||||| || Sbjct 1487946 GAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAATCAGGAC 1487887 Query 168395 CTCTTTATCGGTCTGCAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTC 168454 || | | | ||||| || ||||| | ||||| ||||||| |||| | |||| || Sbjct 1487886 TTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCTCTCTTTC 1487827 Query 168455 ATCTTGAGTTACGACCTG 168472 ||| || || || || || Sbjct 1487826 ATCCTGGGTCACCACTTG 1487809 >seq2442 Length=6439994 Score = 114 bits (126), Expect = 1e-20 Identities = 220/323 (68%), Gaps = 5/323 (2%) Strand=Plus/Plus Query 160047 TGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTA 160106 |||| |||| | || |||| |||||||| ||| || | ||||| ||| ||| | ||| Sbjct 4979955 TGTCTCAGAAGATCATCCAAACATTGGATGGCAAAGAGGTCAATGTCAATGTCAAGCTTA 4980014 Query 160107 TTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACG 160166 || || || | ||||| || | || ||||||| || ||| || | || || | | Sbjct 4980015 TTGGCAAATAAGTGGTGC---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAAATG 4980071 Query 160167 CAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCA 160226 || || || | |||| | || | ||| | |||| |||| ||||| | || ||| Sbjct 4980072 CACACCGAGTGATTGTGGTCCCCATCGCA--GTAGGTAGGGAGCACCTTTGGAAACATCA 4980129 Query 160227 CCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTAT 160286 || || ||||||||||||| ||||||||||| | || |||||||| || ||| || Sbjct 4980130 CCCTCCAAGTACTGCCACTTGACAAACCTGGCAACTGCATGCATGTCAGACAAGTCATAC 4980189 Query 160287 TTGTACATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGG 160346 || | | || | | |||||| || | || |||| ||| | ||| |||| || Sbjct 4980190 TTATGGTTTGTGGAGAGTGAACCGGGGACTTCAGGAATACCCTGGATGGTATCCCAGAGA 4980249 Query 160347 TGTTCGTCGGGGCTGTACGTGTC 160369 || || || ||||||| ||||| Sbjct 4980250 TGCTCATCAGGGCTGTGTGTGTC 4980272 Score = 109 bits (120), Expect = 6e-19 Identities = 230/340 (68%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 160623 ATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTATCACGTACTTCCAT 160682 || |||||||| | || | ||||| || |||| || | |||| || | | ||||| Sbjct 4980524 ATTTCTAGGTTGGATTTAATGGGAAAATCCATACCACAAAGTTTTACCAAGAATTTCCAG 4980583 Query 160683 TTCGCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCCTGCACGCGGCTCCAG 160742 || ||| | | ||||| | ||||| || | || ||||| || ||||||| Sbjct 4980584 CCTGCAGTCATTGCTTAGAGGTCATTGATGCAGTTGAGGTCAGCCTGAACCTGGCTCCAT 4980643 Query 160743 GAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTATCGAAACACGACACG 160802 || || || || || |||| | | || ||||||||||| ||| |||||| | | Sbjct 4980644 GATGCATAAACCACCGTCTCCAATCAGCTCGCCACAAAGACTTTACTGAAACAGAATGCA 4980703 Query 160803 ATTCCCACCACCGC--CAGAAA--GAA-CATCTTATCCGCCTTTCGGTCCACGTGCACGC 160857 || |||| ||| || | |||| ||| ||||| || ||| ||||||||| | || Sbjct 4980704 ATGCCCATCACTGCAGCTGAAAAGGAATCATCTGAT-----TTTTTGTCCACGTGAATGC 4980758 Query 160858 AATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACATCTCTATCTTAT 160917 ||| | ||||||||| ||||||||||| || | ||| | | ||| || ||||| | Sbjct 4980759 GATAGAAATTCTGAGGCATATAGATGGCCCTCAGTAGCCTGTAAAGCATTTCAATCTTGT 4980818 Query 160918 GATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTC 160957 |||| | | ||||| || ||| | ||||||| | ||| Sbjct 4980819 GATGAACAGCTATAGAATATGCTGTTTGAAACTCCGCCTC 4980858 >seq3590 Length=21475887 Score = 105 bits (116), Expect = 8e-18 Identities = 199/290 (69%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 160097 GTCGAATTTATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGA 160156 ||| || || || || ||||| || || ||| || || |||||||||| ||| || | Sbjct 13298931 GTCAAACTTGTTGGCCAACAGGTGATG---GTTTTGAAGCATCCAGTGCAAGTCCCCAGC 13298987 Query 160157 CCCGAACACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTT 160216 ||| | || ||||| | || ||| | || |||||| | ||| |||| || || Sbjct 13298988 CCCATAAACACAGACAGCCCGCTGGTGGATTCCAGAGCAAGGGGCGTAAGGAGCACCCTT 13299047 Query 160217 CGCCACGTCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGA 160276 | | ||| || || | | ||||||||| || | |||||| || | |||||| || Sbjct 13299048 ATCGATGTCTCCCTCATGATCCTGCCACTTGACCAGCCTGGCAATAGAAGTCATGTCTGA 13299107 Query 160277 GGTGTCGTATTTGTACATCAGGGGAACGGCACCGGGAA--CGCCGGGCATACGCTGTAGG 160334 | ||||||| ||| |||||| | || || | | ||| ||| ||||| ||| Sbjct 13299108 GATGTCGTACTTGGGGTGGTTGGGAACAGAGCCAGGCATCCACCGTGCA--CGCTGAAGG 13299165 Query 160335 GTGGCCCACAGGTGTTCGTCGGGGCTGTACGTGTCCTTAGACCATTCCAT 160384 |||||||| |||||||| || ||||| || ||||| || |||||| || Sbjct 13299166 GTGGCCCAGAGGTGTTCATCAGGGCTATAGGTGTCTTTTACCCATTCAAT 13299215 >seq2 Length=29505246 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/234 (68%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 160045 TGTGTCGCAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATT 160104 |||||| |||||| | |||| ||| |||| |||||| | ||||| | | || || | Sbjct 1918885 TGTGTCTCAGATGCTTATCCAAACACTGGATGGCGAAAAGGTCAATATACACATCAAACT 1918944 Query 160105 TATTTGCGAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCG-AAC 160163 ||| || ||||| ||||| || | || ||||||| || |||||| | | | || Sbjct 1918945 TATCGGCAAACAGGTGGTGC---TTGAGCAGCATCCAGTTCAAGTCTCCAGCTCTGGAAA 1919001 Query 160164 ACGCAGACGGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACG 160223 ||||| | || | ||||| || || | ||| | || | |||| || | | || Sbjct 1919002 ACGCACATTGAGCACATGTGGACTCCATCGCAGGATGGTCATGGAGCACCCTAGGAAACA 1919061 Query 160224 TCACCTTCGTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAG 160277 |||| || |||||| |||||| ||| | || || || | |||||||||||| Sbjct 1919062 TCACACTCAAAGTACTACCACTTGACAGAGCTAGCAATTGTGTGCATGTCGGAG 1919115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577136708161080