Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq888 113 8e-20 seq9220 104 4e-17 seq4803 93.3 8e-14 seq8115 87.8 3e-12 seq3835 87.8 3e-12 >seq888 Length=8072957 Score = 113 bits (124), Expect = 8e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 193152 ACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCT 193211 || ||||| | |||| ||| || |||||| ||||| || || || | ||| || Sbjct 5993365 ACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCC 5993424 Query 193212 AATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGT 193271 | ||| || || ||||| || | ||| || ||||||||||| |||||||| ||||| || Sbjct 5993425 AGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGG 5993484 Query 193272 ATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTA 193331 || |||| |||| |||| || ||||| || | ||||||| || || || || || Sbjct 5993485 ATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACTTTGAGGGTGATGGTCTTC 5993544 Query 193332 CCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| | || || |||||||| Sbjct 5993545 CCCGTAAGGGTTTTCAGGAAAATCTGCATTTT 5993576 >seq9220 Length=42800024 Score = 104 bits (114), Expect = 4e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 193164 GTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCG 193223 |||| ||| || |||||| ||||| || || || | ||| || | ||| || || Sbjct 9829996 GTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCA 9830055 Query 193224 GCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTT 193283 ||||| || ||| || ||||||||||| |||||||| ||||| || || | ||| ||| Sbjct 9830056 GCAAAGATCGGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGTCTTT 9830115 Query 193284 ATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTT 193343 | |||| | || ||||| || | ||| | || || || || || || || || || ||| Sbjct 9830116 ACATTTTATATCGTATCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTT 9830175 Query 193344 TTTACAAATATTTGCATTTT 193363 || | || || |||||||| Sbjct 9830176 TTCATGAAAATCTGCATTTT 9830195 >seq4803 Length=30560297 Score = 93.3 bits (102), Expect = 8e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 193155 AGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAATCGTCTAAT 193214 ||||| | |||| ||| || ||| || |||| || || || | || || | | Sbjct 28369793 AGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGT 28369852 Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || | || ||||| || | ||| || ||||||||||| |||||||| ||||| || || Sbjct 28369853 TGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC 28369912 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| |||| |||| ||||| || | ||||| || || || ||||| || || Sbjct 28369913 TTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCC 28369972 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 |||| ||||| || || || |||||||| Sbjct 28369973 CTTAGAGTTTTCACGAAAATCTGCATTTT 28370001 >seq8115 Length=33050683 Score = 87.8 bits (96), Expect = 3e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || || || ||||| || | ||| || ||||||||||| |||||||| || Sbjct 31332633 ATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTT 31332574 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || |||| |||| |||| || || | | | ||||| || || || || Sbjct 31332573 ATCCTGGATATTGGCCTTTACATTTTCTATTGTGTTCAAGGGTTCAACCTCAAGGGTAAT 31332514 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 || || ||||| | ||||| || || || ||||||| Sbjct 31332513 GGTCTTCCCTGTAAAGGTTTTCACGAAAATCTGCATTT 31332476 >seq3835 Length=881625 Score = 87.8 bits (96), Expect = 3e-12 Identities = 159/233 (68%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 ||||||||||||| || || ||||| |||| || | |||||| || || ||||| Sbjct 142373 ATACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCA 142432 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | ||| || | || || || ||||| || | ||||| || || || Sbjct 142433 GAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGG 142492 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| ||||| || ||||||| || | |||| || || || | ||| Sbjct 142493 GGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCC 142552 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || || || || || || || || || || || || || |||||||| Sbjct 142553 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 142605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899525828140560