Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq888 136 8e-27 seq9220 127 4e-24 seq4692 120 6e-22 seq1108 118 2e-21 seq4141 114 3e-20 seq4803 102 2e-16 seq8115 100 6e-16 seq2120 86.0 1e-11 >seq888 Length=8072957 Score = 136 bits (150), Expect = 8e-27 Identities = 171/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 5993346 ACCACCACGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 5993404 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || |||||||| | Sbjct 5993405 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 5993464 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | ||| || | ||| | Sbjct 5993465 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 5993524 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 ||| || || ||||| || || || | ||||| | || ||||||||||| Sbjct 5993525 CTTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATTTT 5993576 >seq9220 Length=42800024 Score = 127 bits (140), Expect = 4e-24 Identities = 169/232 (73%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | || | ||||| ||| ||| || ||||| || |||| Sbjct 9829965 ACCACCACGAAGTCTCAACACGAGATAAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 9830023 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| ||| || |||||||| | Sbjct 9830024 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAG 9830083 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | | |||||||| ||| | ||| || | ||| Sbjct 9830084 GAATTCCTTCCTTATCCTGGATCTCGGTCTTTACATTTTATATCGTATCCGAGGGTTCAG 9830143 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| || || ||||||||||| Sbjct 9830144 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 9830195 >seq4692 Length=25524837 Score = 120 bits (132), Expect = 6e-22 Identities = 168/232 (72%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || ||||| || |||| Sbjct 22647586 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAG 22647644 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || | | |||| |||| ||| || ||||||||||| ||| || ||| |||| | Sbjct 22647645 ACAAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAG 22647704 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || | |||||||| ||| | ||| || | ||| | Sbjct 22647705 GAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAA 22647764 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| || || ||||||||||| Sbjct 22647765 CATCGAGGGTGATGGTCTT-CCCGTAAGGGTTTTCATGAAAATCTGCATTTT 22647815 >seq1108 Length=15764245 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 192325 AATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCA 192384 || || ||||| | ||||| |||||| ||||| || ||||| || || ||| |||| Sbjct 5636265 AACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTACGTCCATCT 5636324 Query 192385 TCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCT 192444 |||| ||| || ||||||||||| |||||| || |||| || |||||||| ||| | Sbjct 5636325 TCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCGACCAGGAGGAATTCCTTCCTTAACC 5636384 Query 192445 TGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTT 192504 || || || |||||||| ||| | ||| || | ||| || || || || ||||| Sbjct 5636385 TGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCGAGGGTGATGGTC 5636444 Query 192505 TTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || | ||| | | || ||||||||||| Sbjct 5636445 TTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5636479 >seq4141 Length=17607553 Score = 114 bits (126), Expect = 3e-20 Identities = 166/232 (72%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || |||| || |||| Sbjct 16723047 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAC-TATTGTAGTCAG 16722989 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | || || ||| |||| |||| ||| || ||||||||||| | ||| || || |||| | Sbjct 16722988 ACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCGGAGCAGGAG 16722929 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| || || || || || |||||||| ||| ||| || | ||| | Sbjct 16722928 GAATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAA 16722869 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 16722868 CCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 16722817 >seq4803 Length=30560297 Score = 102 bits (112), Expect = 2e-16 Identities = 149/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||||| ||| ||| || || || | ||||| || || ||| | || |||| || Sbjct 28369795 ATGAAGAGTAGGCTCCTTTTGA-ATGTTGCAGTCAGACAAAGTACGTCCGTCTTCCAGTT 28369853 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | | ||||||||||| | ||| || |||||||| || |||||||| ||||| || || | Sbjct 28369854 GCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCT 28369913 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| | | |||||| | ||| || || || || || || || || Sbjct 28369914 TGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGTGATAGTCTTCCCCC 28369973 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 ||| ||||| | || ||||||||||| Sbjct 28369974 TTAGAGTTTTCACGAAAATCTGCATTTT 28370001 >seq8115 Length=33050683 Score = 100 bits (110), Expect = 6e-16 Identities = 161/231 (70%), Gaps = 13/231 (6%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| | || || | ||| | ||||| ||| ||| || || || || |||| Sbjct 31332694 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTTGTAGTCAG 31332636 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTG 192427 | |||| ||||| || || ||||||||||| | ||| || |||||||| | Sbjct 31332635 A-----------CATCTTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAG 31332587 Query 192428 GTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTA 192487 | |||||||| ||||| || || || |||||||| ||| | | | | ||| | Sbjct 31332586 GAATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTATTGTGTTCAAGGGTTCAA 31332527 Query 192488 CTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | || || |||||||| || || || || ||||| | || |||||||||| Sbjct 31332526 CCTCAAGGGTAATGGTCTTCCCTGTAAAGGTTTTCACGAAAATCTGCATTT 31332476 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/234 (71%), Gaps = 5/234 (2%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 |||||| | ||| || || | ||| | ||||| ||| ||| || || | || |||| Sbjct 7985721 ACCACCACGAAGTGTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATGTG-TAGTCAG 7985778 Query 192368 ATAATGTTCGTTCATCATCCAATTG--TTTACCAGCAAAGATTAATCTCTGTTGATCAGG 192425 | || || | | |||| |||| ||| ||| | ||||||||| | ||| || |||||| Sbjct 7985779 ACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGCCCATCAGG 7985838 Query 192426 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTC 192485 || |||||||| ||||| || || || |||||||| | | | |||||| | ||| Sbjct 7985839 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCTGAGGGTTC 7985898 Query 192486 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || || ||||| || || || | ||||| | || ||||||||||| Sbjct 7985899 AACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCGTGAAAATCTGCATTTT 7985952 >seq2120 Length=3212655 Score = 86.0 bits (94), Expect = 1e-11 Identities = 146/208 (70%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 192333 ATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATT 192391 ||| | ||| | ||| ||| || || || || ||||| | || | | |||| |||| || Sbjct 2164698 ATGAAGAGTGGGCTCCTTTCGA-ATGTTGTAGTCAGACA--GTACATCCATCTTCCAGTT 2164754 Query 192392 GTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTT 192451 | || ||||||||||| | |||||| | |||||| || ||||||| ||||| || || | Sbjct 2164755 GCTTGCCAGCAAAGATCAGTCTCTGCTCATCAGGAGGAATTCCTTGCTTATCCTGGATCT 2164814 Query 192452 TATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAG 192511 | |||||||| ||| | ||| | ||| || || || || ||||| || || | Sbjct 2164815 TGGCCTTTACATTTTCTATCGTATCCACAGGTTCGACCTCGAGGGTGATGGTCTTCCCCG 2164874 Query 192512 TTAATGTTTTAATAAATATCTGCATTTT 192539 | | ||| || || |||||| |||| Sbjct 2164875 TAA----TTTTATGAAAATCTGCGTTTT 2164898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984335788139550