Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq888 136 7e-27 seq9220 127 4e-24 seq4692 118 2e-21 seq1108 118 2e-21 seq4141 111 3e-19 seq4803 109 1e-18 seq8115 96.9 6e-15 >seq888 Length=8072957 Score = 136 bits (150), Expect = 7e-27 Identities = 174/240 (73%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 5993337 TTTCTTAGCACCACCACGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGAATATT 5993396 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || | ||| || || Sbjct 5993397 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTG 5993456 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| ||| ||||| || Sbjct 5993457 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGA 5993516 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| |||| || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 5993517 GGGTTCAACTTTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATTTT 5993576 >seq9220 Length=42800024 Score = 127 bits (140), Expect = 4e-24 Identities = 172/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | || | ||||| ||| || |||||| Sbjct 9829956 TTTCTTAGCACCACCACGAAGTCTCAACACGAGATAAAGAGTAGACTCCTTTTGAATATT 9830015 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || ||| || || Sbjct 9830016 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTG 9830075 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || | | |||||||| ||| ||||| || Sbjct 9830076 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGTCTTTACATTTTATATCGTATCCGA 9830135 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| | || || || ||||| || || || | ||||| ||||| ||||||||||| Sbjct 9830136 GGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTT 9830195 >seq4692 Length=25524837 Score = 118 bits (130), Expect = 2e-21 Identities = 171/240 (71%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | ||||| || || | ||| | ||||| ||| || |||||| Sbjct 22647577 TTTCTTAGAACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATT 22647636 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| | | | || |||| ||| || |||||||| || ||| || || Sbjct 22647637 GTAGTCAGACAAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTG 22647696 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||||| || || | |||||||| ||| ||||| || Sbjct 22647697 AGCAGGAGGAATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGA 22647756 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||||| ||||| ||||||||||| Sbjct 22647757 GGGTTCAACATCGAGGGTGATGGTCTTCCC-GTAAGGGTTTTCATGAAAATCTGCATTTT 22647815 >seq1108 Length=15764245 Score = 118 bits (130), Expect = 2e-21 Identities = 170/240 (71%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | || | | ||||| || || ||||| | ||||| |||||| |||||| Sbjct 5636240 TTTCTTAGCAGCATCACGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATT 5636299 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 || || || |||| ||| | || |||| ||| || |||||||| || |||||| | Sbjct 5636300 GTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTCTGCCG 5636359 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 |||| || |||||||| ||| | || || || |||||||| ||| ||||| || Sbjct 5636360 ACCAGGAGGAATTCCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGA 5636419 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || ||||| || || || | ||| | | ||| ||||||||||| Sbjct 5636420 GGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTATCACGAAAATCTGCATTTT 5636479 >seq4141 Length=17607553 Score = 111 bits (122), Expect = 3e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | ||||| || || | ||| | ||||| ||| || | |||| || || || Sbjct 16723047 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGACTATTGTAGTCAGA 16722988 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| ||| | || |||| ||| || |||||||| || | ||| || | |||| || Sbjct 16722987 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCGGAGCAGGAGG 16722928 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || || || || || |||||||| ||| |||| || | ||| || Sbjct 16722927 AATTCCTTCCTTCTCCTGGATCTTGGCCTTTACATTTTCTATCATATCCGAGGGTTCAAC 16722868 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || || ||||| || || || | ||||| | ||| ||||||||||| Sbjct 16722867 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCATTTT 16722817 >seq4803 Length=30560297 Score = 109 bits (120), Expect = 1e-18 Identities = 168/240 (70%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || | |||| | ||||| || | | ||| | ||||| ||| || ||| || Sbjct 28369762 TTTCTTAGCAACACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTT 28369821 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTG 171952 | || || |||| ||| |||| |||| ||| | |||||||| || | ||| || || Sbjct 28369822 GCAGTCAGACAAAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTG 28369881 Query 171953 GTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGA 172012 ||||| || |||||||| ||||| || || || |||||||| | |||||||| Sbjct 28369882 ATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGA 28369941 Query 172013 CGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 | ||| || || || || || || || || ||| ||||| | ||| ||||||||||| Sbjct 28369942 GGGTTCAACCTCAAGGGTGATAGTCTTCCCCCTTAGAGTTTTCACGAAAATCTGCATTTT 28370001 >seq8115 Length=33050683 Score = 96.9 bits (106), Expect = 6e-15 Identities = 168/242 (69%), Gaps = 3/242 (1%) Strand=Plus/Plus Query 171833 TTTCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATT 171892 |||| || |||||| | |||| || || | ||| | ||||| ||| || ||| | Sbjct 7985712 TTTCTTAGCACCACCACGAAGTGTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTG 7985771 Query 171893 ATAATCTGATAAAGATCGTTCGTCATCCAATTG--TTTACCAGCAAAAATTAATCTCTGT 171950 || || || |||| | | | || |||| ||| ||| | |||||| || | ||| || Sbjct 7985772 -TAGTCAGACAAAGTACATCCATCCTCCAGTTGCTTTTGCTAGCAAAGATCAGTCTTTGC 7985830 Query 171951 TGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCT 172010 ||||| || |||||||| ||||| || || || |||||||| | | |||||| Sbjct 7985831 CCATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGTCGTATCT 7985890 Query 172011 GACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 || | ||| || || || || ||||| || || || | ||||| |||| ||||||||| Sbjct 7985891 GAGGGTTCAACCTCGAGGGTGATGGTCTTCCCTGTAAGGGTTTTCGTGAAAATCTGCATT 7985950 Query 172071 TT 172072 || Sbjct 7985951 TT 7985952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905006644751400