Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2044 136 4e-27 seq3835 127 2e-24 seq5683 114 1e-20 seq2485 98.7 1e-15 seq3 98.7 1e-15 seq5794 91.5 1e-13 seq10991 89.7 5e-13 seq2078 86.0 6e-12 >seq2044 Length=20526591 Score = 136 bits (150), Expect = 4e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | || || |||||||| || Sbjct 13287243 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCC 13287302 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || |||| ||||||||||||||| ||||||||||| || ||||||| ||| Sbjct 13287303 GGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTT 13287362 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || || | ||||| ||| ||||| || || || Sbjct 13287363 GACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGT 13287422 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||||| |||||||| Sbjct 13287423 CTTCACGAAGATCTGCAT 13287440 Score = 113 bits (124), Expect = 4e-20 Identities = 109/135 (81%), Gaps = 4/135 (3%) Strand=Plus/Plus Query 133528 AAATGAGCCGCTGCTGGTCGGGAGGG-ATGCCTTCCTTGTCGGTGATCTTTT-GCTTGAG 133585 |||| | || ||||||||| |||||| |||||||||||||| |||||||| |||||| Sbjct 13286203 AAATCAACCTCTGCTGGTCAGGAGGGGATGCCTTCCTTGTCCTGGATCTTTTGGCTTGAC 13286262 Query 133586 CTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTT 133645 | ||||| ||| || ||||| |||| |||| ||||| ||| ||||| ||||| || || Sbjct 13286263 ATTCTCAATGGTG-CGCTGGGC-CCACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTT 13286320 Query 133646 TACGAAAATCTGCAT 133660 ||||| |||||||| Sbjct 13286321 CACGAAGATCTGCAT 13286335 Score = 113 bits (124), Expect = 4e-20 Identities = 147/198 (74%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||| ||||| || || ||||| ||| || ||| | || || |||||||| || Sbjct 13286595 GGTGGA-TCTTT-TGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCC 13286652 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| || |||| || Sbjct 13286653 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTCTGGACTTTGCTTT 13286712 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||| | ||||| ||||||| || |||| ||||| ||| ||||| ||||| || Sbjct 13286713 GACGTTCTCGA-TGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGT 13286771 Query 133643 TTTTACGAAAATCTGCAT 133660 || ||| | |||||||| Sbjct 13286772 CTTCACG-AGATCTGCAT 13286788 Score = 105 bits (116), Expect = 6e-18 Identities = 146/200 (73%), Gaps = 6/200 (3%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| | || || ||||| || || Sbjct 13286368 GGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTG-TTTCC 13286426 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| | |||||||||||||||| || ||||| ||| Sbjct 13286427 AGCAAAGATCAACCTCTGCTGGTCAG--GGGATGCCTTCCTTGTTCCTGGTCTTTGCCTT 13286484 Query 133583 G--AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 | | | ||| | || || ||||||| || |||| ||||| ||| ||||| ||||| Sbjct 13286485 GACACATTCTCGATGGT-TCACTGGGCTCAACCTCGAGGGTGATGGTCTTGCCAGTCAGG 13286543 Query 133641 GTTTTTACGAAAATCTGCAT 133660 || || ||||| |||||||| Sbjct 13286544 GTCTTCACGAAGATCTGCAT 13286563 Score = 89.7 bits (98), Expect = 5e-13 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 |||||||||||||| || ||||| || || ||| | | | || || ||||| || || Sbjct 13285979 GTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGTCCA-TCTTCCAGCTGTTTCCC 13286037 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | || | || ||||||||| |||||||||||||||||||| ||||||| ||| Sbjct 13286038 AGCAAAGATCAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCCTGGATCTTTGCCTT 13286097 Query 133583 GAGCTGCTCAACCGTGTC 133600 || | ||||| ||||| Sbjct 13286098 GACATTCTCAATGGTGTC 13286115 >seq3835 Length=881625 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 141949 GGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 142007 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| ||||||||||| || || |||||| || Sbjct 142008 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCT 142067 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 142068 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGG 142127 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 142128 TCTTCACGAAGATCTGCAT 142146 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 142177 GGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 142235 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| ||||||||||| || || |||||| || Sbjct 142236 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCT 142295 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 142296 TCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGG 142355 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 142356 TCTTCACGAAGATCTGCAT 142374 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||||||||| || ||||| || | ||| | | | || || |||||||||| Sbjct 142405 GGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCA-TCTTCCAGCTGCTTGC 142463 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||||||||||| || ||||||||||| || ||| || || Sbjct 142464 CTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCT 142523 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||||||||||| | Sbjct 142524 TCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGG 142583 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| |||||||| Sbjct 142584 TCTTCACGAAGATCTGCAT 142602 >seq5683 Length=19003911 Score = 114 bits (126), Expect = 1e-20 Identities = 149/201 (74%), Gaps = 4/201 (2%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || ||||| || | ||| | | | || || ||||| |||| Sbjct 4210491 GGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA-TCTTCCAGCTGTTTGC 4210549 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC- 133580 | || | || || ||||||||||| || ||||| || |||||||| ||| ||| || Sbjct 4210550 CGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC-TTGAATTTTGGCT 4210608 Query 133581 TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGA 133640 |||| | ||||| ||||| ||||||| || || | ||||| ||||||||| | || Sbjct 4210609 TTGACATTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTTTTGCCCGGGAGG 4210668 Query 133641 GTTTTTACGAAAATCTGCATG 133661 || || || || ||||||||| Sbjct 4210669 GTCTTCACAAAGATCTGCATG 4210689 >seq2485 Length=14009840 Score = 98.7 bits (108), Expect = 1e-15 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||||||||| || || ||||| | ||| | | | ||||| | ||| |||| Sbjct 703673 GGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCA-TCCTCCAACTGTTTGC 703731 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 || | | || || |||||||||| || |||||||| |||||||| |||||| | Sbjct 703732 CCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATGGATCTTGGCTT 703791 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||| ||||| |||||| || || | ||||| |||| | || || || | Sbjct 703792 TGACGTTTTCACTGGTGTCACTGGGCTGGACCTCAAAGGTGATGGTTCTTCCTGTGAGGG 703851 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | ||||| | ||||||||| || Sbjct 703852 TCTTTACAGAGATCTGCATGTCT 703874 >seq3 Length=21509657 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/156 (75%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| |||||||| | || || ||||||||||| | |||||||| |||||| Sbjct 6625620 TCCTCCAGCTGTTTGCCCGCAAATATCAGACGCTGCTGGTCAAGTGGGATGCCCTCCTTG 6625679 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 | ||| ||| | ||||| | |||| ||||| ||||||| || |||| ||||| Sbjct 6625680 GC-TTGAATTTTGGCCTTGACATTCTCAGTGGTGTCACTGGGCTCGACCTCGAGGGTGAT 6625738 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 ||| ||||| | || || || || || |||||||| Sbjct 6625739 GGTCTTGCCTGCGAGGGTCTTCACAAAGATCTGCAT 6625774 >seq5794 Length=19985615 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/199 (71%), Gaps = 3/199 (2%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| || |||||||| || ||||| || | ||| | | | || || |||||| ||| Sbjct 9719342 GGTCGATTCTTTCTGGATGTTGTAGTCAGAAAG-GTGCGGCCA-TCTTCCAGCTGCATGC 9719285 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||||| |||| ||||||| |||||||||||| || ||| || || Sbjct 9719284 CTGCAAAGATGAGCCTCTGCGGGTCGGGGCAGATGCCTTCCTTATCCTGGATATTGGCCT 9719225 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | || | ||||| |||||||||| || | ||||| ||| ||| | ||||| | Sbjct 9719224 TCACATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGTCTTGTCAGTCAGGG 9719165 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| | |||||| Sbjct 9719164 TCTTCACGAAGACCTGCAT 9719146 >seq10991 Length=13028613 Score = 89.7 bits (98), Expect = 5e-13 Identities = 146/204 (72%), Gaps = 5/204 (2%) Strand=Plus/Minus Query 133460 TATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCT 133518 || ||||||||||||||| || ||||| | | ||| | | | ||||| ||||| | Sbjct 8493135 TAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCA-TCCTCCAGCTGTT 8493077 Query 133519 TGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGAT-GCCTTCCTTGTCGGTGATCTTT 133577 | || || || || ||||||||||| || ||||| || |||||||| ||| ||| Sbjct 8493076 TCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGGGATACCCCTCCTTGTC-TTGAATTTT 8493018 Query 133578 TGC-TTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGT 133636 || |||| | || || ||||| ||||||| | |||| ||||| ||| ||||| | Sbjct 8493017 GGCTTTGACATTCTAAATGGTGTCACTGGGCTCGATCTCGAGGGTGATGGTCTTGCCCAT 8492958 Query 133637 CAGAGTTTTTACGAAAATCTGCAT 133660 || || || || || |||||||| Sbjct 8492957 GAGGGTCTTCACAAAGATCTGCAT 8492934 >seq2078 Length=10708440 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 |||||||| ||| || || ||||| || | ||| | ||||| ||||||||||| Sbjct 9965677 GGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCCAGCTGCTTGCC 9965736 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 || | || || ||||||||||| || ||||| || || ||||| ||| ||| || | Sbjct 9965737 AGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGTC-TTGAATTTTGGCTT 9965795 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| |||| ||||||| || || | | ||| ||| ||||| || || | Sbjct 9965796 TGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTTGCCCGTGAGGG 9965855 Query 133642 TTTTTACGAAAATCTGCAT 133660 | | || || | |||||| Sbjct 9965856 TCTCCACAAAGAGCTGCAT 9965874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483351713124920