Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq9220 219 5e-52 seq2763 194 2e-44 seq1822 150 2e-31 seq2442 93.3 5e-14 >seq9220 Length=42800024 Score = 219 bits (242), Expect = 5e-52 Identities = 606/921 (66%), Gaps = 11/921 (1%) Strand=Plus/Minus Query 162067 TTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCTCATCGAAC 162126 ||||| | | || ||| || | |||||||| || || | ||| ||| | || ||| Sbjct 29434340 TTATGCCTCAAATGCTCATCCAAACACTGGATGGCAAAGAGGTCAACATCCACGTCAAAC 29434281 Query 162127 TTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCGATCCGAAC 162186 || || || |||| ||| || || || ||||| || | || || | ||| || Sbjct 29434280 TTATTGGCAAACAAGTGGTGT---TTGCGCAGCATCCAGTTCAAGTCACCAGCTCCAAAA 29434224 Query 162187 ACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCATCGTCCACA 162246 | |||||| || |||||||| || || ||| || || || |||| || | | ||| Sbjct 29434223 ATGCACACCGAGCGCACGTGGACTCCATCGCAGGGAGGGTAGGGGGCACCCTTGGAAACA 29434164 Query 162247 TCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGGAGGTGTCG 162306 || ||||| ||||||||||||| || ||||| | | || |||||||| || ||| Sbjct 29434163 TCACCCTCAAAGTATTGCCACTTGACAAACCTGGCAACTGCTTGCATGTCAGACAAATCG 29434104 Query 162307 TACTTGTACACTGACGGCACG-GCTCCAGGAACACCCGGCAGTCTCTGTAGAGTAGCCCA 162365 ||||| | ||| | | | | | || || || | || | ||||| | || ||||| Sbjct 29434103 TACTTATGG-CTGGCAGAAAGTGAGCCCGGGACTTCAGGAATCCTCTGGATGGTGGCCCA 29434045 Query 162366 CAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTGACCGTTTT 162425 || | || || || || || || || | || ||||||||| |||| || ||| Sbjct 29434044 GAGATACTCATCAGGGCTGTATGTGTCTTGCGCCCACTCCATAAACTTTTGGATGTTTTC 29433985 Query 162426 ATCGTATAGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCGCTACCAGAAAA 162485 || | ||| | || || || ||| | || | |||||| || || |||||||| Sbjct 29433984 ATTCTGTAGTACATACCCCACATACTCCCTACTGACCACAAAGTAGGCACTGCCAGAAAA 29433925 Query 162486 CACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACTACCATTCCCTC 162545 | ||| | | ||||| || |||| | || ||||| | | |||| | Sbjct 29433924 AAGCGGTGTTTCGAGCGGAGGAAGCATTTTGACAGTCCCTGTGTTTGTCAGCTTTCCATT 29433865 Query 162546 TACGACCACGTGTCTCTTCCTCCACCTGGCCATCTTACTGGTA-GACGGGTGTTCGGTCT 162604 |||||| | | | ||| ||||||| | |||| ||| | | | || || | Sbjct 29433864 AACGACCTCATACCGCTTTTTCCACCTTTCT-TCTTTATGGGATGGCATCCTCTCCGTTT 29433806 Query 162605 CTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTCTAGATTGGTCTTAA 162664 | || ||||| ||| || ||| |||| | || || ||||| ||||| |||| Sbjct 29433805 CCAGGCTGTTTTCTCCCATTAACAACTTGAGCTTCCTGACAATTTCTAGGTTGGTTTTAA 29433746 Query 162665 GGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAACGCTGAGTCCGTACA 162724 ||||| || | || || ||||| || | || ||||| || | || | | | || | Sbjct 29433745 TAGGAAAATCCATACCACAAAGATTTATCAAGTACTTCCAGTTTGCACTCATTGCATAGA 29433686 Query 162725 GATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCT 162784 | |||| | ||||| || || ||||| || |||||||| || || || || || |||| Sbjct 29433685 GGTCCTTCATGCAGTTGAGGTCAGCCTGAACCCGACTCCATGATGCATAAACCACACTCT 29433626 Query 162785 CCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTG 162844 |||| | |||| ||||||||||| |||||| ||| | || |||||||| || | Sbjct 29433625 CCAATCGGCTGGCCACAAAGACATTACTGAAACAGGAAGCGATGCCCATCACTGCAGCTA 29433566 Query 162845 AGAA--CATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTA 162902 | | ||| || | ||| | || || || | ||| || | ||||||||| || Sbjct 29433565 AATAGGAATC--CTCGGATTTTGTGTCCACATGAATGCAATAGAAATTCTGAGGCATATA 29433508 Query 162903 GATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGC 162962 |||||||||||| | || || | ||| || ||||| || || ||||| |||||||| || Sbjct 29433507 GATGGCCCTCAGCAGCCTGTCAAGCATTTCAATCTTGTGATGAACCACTATAGAATATGC 29433448 Query 162963 TATGGGGAACTCAGCCTCCTC 162983 ||| || ||||| ||||| || Sbjct 29433447 TATTGGAAACTCTGCCTCTTC 29433427 >seq2763 Length=6127229 Score = 194 bits (214), Expect = 2e-44 Identities = 238/325 (73%), Gaps = 0/325 (0%) Strand=Plus/Minus Query 171771 CATAGAGTGTCAGACAGGTCTTACCCGATATTTTTCCGGACCCAAAAGTATTAAACAAAC 171830 |||||| || || |||| | || || || || || || ||||| ||||| || | || Sbjct 1488133 CATAGACAGTGAGGCAGGCTGTTCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGAC 1488074 Query 171831 ACATAAAACAGCCTTCGTCCTCCACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGA 171890 |||| |||| ||||| ||||||| |||| | ||||| || || | || | ||| || Sbjct 1488073 ACATGTAACACCCTTCATCCTCCAGGGTGATATTCCAGAAGGTGATGGTTGTGTTTTGGA 1488014 Query 171891 GTCCGAGTTGCGTAATGTTCACCCGGTCCTTGTACGGAGGCTGGACGACAACACCGTGAT 171950 |||| || || |||||||| | | |||||| || | |||||||| || || || || | Sbjct 1488013 GTCCCAGCTGGGTAATGTTTATCTTGTCCTTATAGGCAGGCTGGATCACCACCCCATGGT 1487954 Query 171951 TCTCGCTGAACGTGGCCATGTTTTCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTA 172010 |||||||||| ||| |||||||||| ||||| ||| || | |||||||| || || | Sbjct 1487953 TCTCGCTGAAGGTGACCATGTTTTCTGGGCTTACAGCTTTCTTTTTCTGCCATGTCACAA 1487894 Query 172011 TTAAAACTTCTTTGTCGGTTTGAAGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATT 172070 | | ||||| | | | |||| |||||||||||||| |||||||| |||| || | Sbjct 1487893 TCAGGACTTCCTGGGCATTTTGCAGAGAGCATCTTAAGGAAGCAGGAGTGTACAGCTGCT 1487834 Query 172071 CCCTTTCGTCTTGCGTTACCACCTG 172095 | ||||| || || || ||||| || Sbjct 1487833 CTCTTTCATCCTGGGTCACCACTTG 1487809 Score = 111 bits (122), Expect = 2e-19 Identities = 159/221 (72%), Gaps = 5/221 (2%) Strand=Plus/Minus Query 171506 GTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCGTTT 171565 ||||| | | ||| || |||||||||| ||| | || | ||| |||||||||| | Sbjct 1490673 GTTTGCTTAAAGTCAGTCACAGTCCCCAGGTGCAGCACCTGGCAGATCACCTCCT---TC 1490617 Query 171566 CCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCGTTA 171625 ||||| ||| | ||||| ||||| | || || ||||| |||||||| || ||||| || Sbjct 1490616 CCCACCTGATTCTTAGGGTCTTTGATCTGGAGGATGCTGGTAACAGACGTGGTCCCATTT 1490557 Query 171626 CGATGTAGAACG-GTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAATAT 171684 | || ||| | || ||||||||||| | || || | | || ||||| || || Sbjct 1490556 GGGTG-AGACAGAGTCACTGTACTATTTTCAAACCCTGACCGAGGGACCTTCCAGAAGAT 1490498 Query 171685 AACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTA 171725 | || ||||| | ||||| ||||||||||| ||||||| Sbjct 1490497 CATGGGGGCTGGGCGGGCAGTGGCAGAGCAAGTGATGTTTA 1490457 >seq1822 Length=35177949 Score = 150 bits (166), Expect = 2e-31 Identities = 438/663 (66%), Gaps = 15/663 (2%) Strand=Plus/Plus Query 176887 TCCAGTTAAAGTATTGAAGATAAAGGGTGACGTTTTTATCGATGGCGTTGAGGTGCGAGG 176946 ||||||||||||| ||| || | | |||||| |||| | || || | | | Sbjct 25917613 TCCAGTTAAAGTAACTAAGGTATAACTTATTGTTTTTGTCGACTTCCTTCAGATACTTTG 25917672 Query 176947 CCAGTTCTATAGGGGACGTGTAGTCGTTCACGTGAATGAAAGCGTCTCCCGGGACGTAAT 177006 | || || | || || | || || | ||| |||||||| | ||| | || | ||||| Sbjct 25917673 CTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCTGGAATGTAAT 25917732 Query 177007 TTTCGTAATTCTCTCTCGATGTTCCGAGTACTATGGGTACCGCACCTGCCATAAGAGATC 177066 | || || || ||||| |||| ||| || || | ||||| | || |||| || || Sbjct 25917733 TCTCATAGTTTTCTCTAGATGGTCCCAGAACAACAGGTACAGAGCCAGCCAGAAAAGCAT 25917792 Query 177067 GGTAGAGTTTTTCGGTAATATAGTCCCTGTGTACGGAGTTCTCAAACGCGAGATAGAATT 177126 |||||| ||||| || || || ||| |||| | || || ||||| | ||||| |||| Sbjct 25917793 TGTAGAGCTTTTCCGTGATGTAATCCTTGTGGATTGAATTTTCAAAGGAAAGATAAAATT 25917852 Query 177127 TACAGGAAGATA--GTAGCGGGATGAAGTCATCATCGGGTATATAATCTCCTACTACGTT 177184 |||| | ||||| ||| || || || | | ||| | ||| ||||| | | | | Sbjct 25917853 TACAAGTAGATATGGTA--GGAATCAAATTTTTATCATTGACATATTCTCCAAATGCTTG 25917910 Query 177185 CCCGTATACATGTATATCTATGTGTTTACTGAGCTCTAGGTAGTATCTCGA-TCTCACGT 177243 ||| || ||| || || ||| ||| || ||||| ||| || || || || | | Sbjct 25917911 CCCATAGGTATGGATTTCAATGCTTTTGCTTAGCTCATTGTAATA-CTTGACCCTGGCAT 25917969 Query 177244 GGTCGTTGTTCCAATTGCTGACGACCCAGCAAACTAACTTGCTCTTTGC-GGGAACGGGA 177302 | || |||||| || || || |||||||| || ||||| |||||||| || || Sbjct 25917970 GCTCAGGGTTCCAGTTACTCACAACCCAGCACACCAACTT-CTCTTTGCTTGGCAC---- 25918024 Query 177303 TTC-GATACTAATGCAGTGTCTCTGAGCGTTAGTGATCCATAGGGCACGTGAATATCCGA 177361 ||| | || || | | | || | ||| | | ||||| ||||| || ||||| || Sbjct 25918025 TTCAAACACAAAGGGATTTGTGCTCACCGTCAAGAAGCCATAAGGCACTTGGATATCTGA 25918084 Query 177362 GTCGCGTCTGTACGTTAACGTGAGATTGAAAAGGTTTTCTATACC-TTGTTTGAAGGGGC 177420 |||||| | || || || || || || || | || || || || | ||| ||| | Sbjct 25918085 GTCGCGGCGATAAGTCAAAGTCAGGTTAAACAAGTGCTCAATGCCACTCTTTTGAGGAG- 25918143 Query 177421 TGTTACTGGGCGATTCTAAGTTCATCCATATCCACTTTTGAAAGGTTGGTCTGGGTTCCG 177480 ||| | | || || || || |||||||| ||||| || || |||| ||| || | || | Sbjct 25918144 TGTGAGTTGGTGACTCCAAATTCATCCAAATCCATTTCTGGAAGGGTGGCCTAGCTTGCT 25918203 Query 177481 TAGGTAGAGTATAAGGATCTATACTTATCTCTCTGTGGTGAAAGACTACGGCATTGGCTT 177540 ||||| | | |||| ||| || |||| ||| || | | || |||| || || Sbjct 25918204 GAGGTAAATTTGTCAGATCCCAACTGATGTCTCGGTGATGGATCAGAACTGCATGGGATT 25918263 Query 177541 TGT 177543 ||| Sbjct 25918264 TGT 25918266 >seq2442 Length=6439994 Score = 93.3 bits (102), Expect = 5e-14 Identities = 170/247 (69%), Gaps = 4/247 (2%) Strand=Plus/Plus Query 162736 CAGTTCAGATCGGCCTGGACGCGACTCCACGACGCGTACACGACGCTCTCCAACCTAGTG 162795 ||||| || || ||||| || | ||||| || || || || || ||||||| | | Sbjct 4980614 CAGTTGAGGTCAGCCTGAACCTGGCTCCATGATGCATAAACCACCGTCTCCAATCAGCTC 4980673 Query 162796 GCGACAAAGACATTGTCGAAACACGAAACTATCCCCATCACGGCCAGTGAGAAC--ATCG 162853 || |||||||| || |||||| | | || |||||||| || ||| || ||| Sbjct 4980674 GCCACAAAGACTTTACTGAAACAGAATGCAATGCCCATCACTGCAGCTGAAAAGGAATCA 4980733 Query 162854 GGTCCGCTTTCCTATCTACGTGTACGCAGTATAGATTCTGAGGGGCGTAGATGGCCCTCA 162913 || | ||| | || ||||| | || || | ||||||||| ||||||||||||| Sbjct 4980734 --TCTGATTTTTTGTCCACGTGAATGCGATAGAAATTCTGAGGCATATAGATGGCCCTCA 4980791 Query 162914 GTAATCTCTCGAACATCTCTATCTTATGGTGTACCACGATAGAATACGCTATGGGGAACT 162973 ||| || | | ||| || ||||| || || || | |||||||| ||| | | |||| Sbjct 4980792 GTAGCCTGTAAAGCATTTCAATCTTGTGATGAACAGCTATAGAATATGCTGTTTGAAACT 4980851 Query 162974 CAGCCTC 162980 | ||||| Sbjct 4980852 CCGCCTC 4980858 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578349334836800