Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq5683 129 4e-25 seq6237 89.7 3e-13 seq5018 89.7 3e-13 seq3835 86.0 4e-12 seq2276 84.2 1e-11 seq10991 82.4 5e-11 seq2044 82.4 5e-11 >seq5683 Length=19003911 Score = 129 bits (142), Expect = 4e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || ||||||| || || ||| |||||| || |||||||| || ||| Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| |||||||| |||| ||||||||| || | || Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | || || Sbjct 4210582 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTCAATGGTGTCACTGGGCTCGAC 4210640 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| ||||| || | | || || |||||||||||||| Sbjct 4210641 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCAT 4210688 >seq6237 Length=16698259 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || |||||| ||||| |||| ||| || ||| Sbjct 3405854 CCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTCCCAGATGTCGTAGTCTGAG 3405913 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| ||||||| | || | ||||||| || | || Sbjct 3405914 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGGG 3405973 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | | || Sbjct 3405974 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 3406032 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 3406033 CTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 3406080 >seq5018 Length=1154 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || |||||| ||||| |||| ||| || ||| Sbjct 770 CCACCTCGCAGGCGCAGCACCAGGTGCAGAGTGGACTCTTCCCAGATGTCGTAGTCTGAG 711 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || |||| ||||| ||||||| | || | ||||||| || | || Sbjct 710 AGAGTTCGGCCATCCTCCAGCTGTTTGCCGGCAAGTAGCAGATGCTGCTGGTCAGGTGGG 651 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | ||| || ||||| |||||| ||| | ||| ||| |||||| || | | || Sbjct 650 ATACCCTCCTTGTCTTGAATTTTGGCTTTGA-CATCCTCATTGGTGTCACTGGGCTTGAC 592 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 591 CTCAAGAGTGATGGTCTTGCCCGTAAGTGTCTTCACAAAGATCTGCAT 544 >seq3835 Length=881625 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| || | |||| || || || |||||| || |||||||| || || Sbjct 142375 ACCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGA 142434 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 142435 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 142494 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| || || ||||| ||| |||| || | |||||| || | |||| Sbjct 142495 AATGCCTTCCTTATCCTGGATTTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 142553 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| ||||| || || || || | || || || ||||||||||| Sbjct 142554 CCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142602 Score = 84.2 bits (92), Expect = 1e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 ||||||||||| ||| | |||| || || || ||| || || |||||||| || || Sbjct 142147 ACCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGA 142206 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 142207 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGG 142266 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | |||||||| || || || ||| |||| || | |||||| || | |||| Sbjct 142267 GATGCCTTCTTTATCCTGGATCTTGGCCTTC-ACATTTTCGATGGTGTCACTGGGCTCCA 142325 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || || |||||||||||| Sbjct 142326 CTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 142375 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | |||| || || || ||| || || |||||||| || ||| Sbjct 141920 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 141979 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| || | | |||||| || | || Sbjct 141980 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142039 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | |||||||| || || || |||| ||| || | |||||| || | ||||| Sbjct 142040 ATGCCTTCTTTATCTTGGATCTTGGCCTTCA-CATTTTCGATGGTGTCACTGGGCTCCAC 142098 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||| ||||| || || || || | || || || |||||||||||| Sbjct 142099 CTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATA 142147 >seq2276 Length=6341472 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || || | ||||| || || ||| ||| || || ||||| || || ||| Sbjct 2189084 CCACCTCACAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTCTAGTCTGAG 2189143 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||| | || ||| ||||| || ||||| |||| || |||||| || || | Sbjct 2189144 AGATTGCGGCCATCCTCCGGCTGTTTGCCCGCAAATATCAGACACTGCTGGTCAGGCAGG 2189203 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || | ||||| |||| | | || |||| ||| |||||| || | ||||| Sbjct 2189204 ATGCCCTACTTGTCTTGGATTT-CGGCTTTGACATTCTCAGTGGTGTCCCTGGGCTCCAC 2189262 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || | | || || |||||||||||||| Sbjct 2189263 CTCAAGGGTGATGGTCTTGCCCATGAGGGTGTTCACAAAGATCTGCAT 2189310 >seq10991 Length=13028613 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/229 (69%), Gaps = 3/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| || | | ||||| | ||| ||| |||||| || |||||||| | ||| Sbjct 8493161 CCACCTCGCAGGCACAGCACCAGGTTTAGGGTGGACTCTTTCTGGATGTTGTAGCCTGAG 8493102 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| ||||| || |||| |||| ||||||||| || | || Sbjct 8493101 AGAGTGCGGCCATCCTCCAGCTGTTTCCCAGCAAGTATCAGACGCTGCTGGTCAGGTGGG 8493042 Query 33643 ACACCT-TCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||| || ||||| |||||| ||| | ||| | | |||||| || | || | Sbjct 8493041 ATACCCCTCCTTGTCTTGAATTTTGGCTTTGA-CATTCTAAATGGTGTCACTGGGCTCGA 8492983 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || | | || || |||||||||||||| Sbjct 8492982 TCTCGAGGGTGATGGTCTTGCCCATGAGGGTCTTCACAAAGATCTGCAT 8492934 >seq2044 Length=20526591 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 33547 TGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGT 33606 || || ||| |||||| || |||||||| || || || ||||| | || |||| || Sbjct 13287238 TGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGC 13287297 Query 33607 TTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTC 33666 ||||||||||| |||| | |||||| || | || | ||||| || || || || Sbjct 13287298 TTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTT- 13287356 Query 33667 TGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGT 33725 || | |||| || | |||||| || | || || |||| ||||| || || || || Sbjct 13287357 TGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGT 13287416 Query 33726 TAACGTTTTTACAAAGATCTGCATAGT 33752 | || || || ||||||||||| || Sbjct 13287417 GAGGGTCTTCACGAAGATCTGCATTGT 13287443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328658198487360