Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq888 129 1e-24 seq4141 114 3e-20 seq8115 107 5e-18 seq1108 105 2e-17 seq4692 104 6e-17 seq2044 102 2e-16 seq9220 96.9 8e-15 seq4803 95.1 3e-14 seq3835 84.2 5e-11 seq2120 84.2 5e-11 >seq888 Length=8072957 Score = 129 bits (142), Expect = 1e-24 Identities = 152/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | |||| ||| || || || | ||| Sbjct 5993558 AAAACCCTTACGGGGAAGACCATCACCCTCAAAGTTGAACCCTCGGATACGATAGAAAAT 5993499 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || |||||||| ||||| Sbjct 5993498 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 5993439 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| | || || |||||| Sbjct 5993438 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCT 5993379 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||||||||||||||| Sbjct 5993378 ACTCTTCATCTTGTTTTGAGACTTCG 5993353 Score = 113 bits (124), Expect = 1e-19 Identities = 88/105 (84%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||||||||| |||||||||||||| || || | ||| ||||||| |||||| Sbjct 5993353 CGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 5993412 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| || | ||| ||| Sbjct 5993413 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGA 5993457 >seq4141 Length=17607553 Score = 114 bits (126), Expect = 3e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| | || || ||| || || | | ||| Sbjct 16722835 AAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATATGATAGAAAAT 16722894 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || | | |||||||| ||||| Sbjct 16722895 GTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCTCCGCAAAGACTGATCTTT 16722954 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | |||||| | || ||||| || || |||||| Sbjct 16722955 GCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATAGTCAAAAGGAGTCT 16723014 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 16723015 ACTCTTCATCTTGTGTTGAGACTTCG 16723040 Score = 102 bits (112), Expect = 2e-16 Identities = 83/101 (82%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || ||| ||||||| |||||| Sbjct 16723040 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGACTATTGTAGTCAGACAAAGTA 16722981 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTG 204852 | |||||||||||| ||||| || || ||||| || | ||| Sbjct 16722980 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTG 16722940 >seq8115 Length=33050683 Score = 107 bits (118), Expect = 5e-18 Identities = 150/208 (72%), Gaps = 3/208 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || ||||| || || ||||| | || || ||| || || || ||| Sbjct 7985934 AAAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCAGATACGACAGAAAAT 7985875 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || ||||||||| || || | |||||||| ||||| Sbjct 7985874 GTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATGGGCAAAGACTGATCTTT 7985815 Query 206305 GCCGG--AAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGT 206362 || | |||||| |||| |||||| | |||||| | || |||| | | || || |||| Sbjct 7985814 GCTAGCAAAAGCAACTGGAGGATGGATGTACTTTGTCTGACTACA-CATTCAAAAGGAGT 7985756 Query 206363 CTACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||||| ||||| |||| |||||| Sbjct 7985755 CTACTCTTCATCTTGTGTTGACACTTCG 7985728 Score = 93.3 bits (102), Expect = 1e-13 Identities = 143/206 (69%), Gaps = 11/206 (5%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| | ||||| || || || || | || || ||| | ||||| | ||| Sbjct 31332493 AAAACCTTTACAGGGAAGACCATTACCCTTGAGGTTGAACCCTTGAACACAATAGAAAAT 31332552 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| || || || || || ||||||||| || || |||||||| ||||| Sbjct 31332553 GTAAAGGCCAATATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACTGATCTTT 31332612 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||||||||||| || | || |||||| | || || |||||| Sbjct 31332613 GCTGGCAAGCAGTTGGAAGA-----------TGTCTGACTACAACATTCAAAAGGAGTCT 31332661 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 31332662 ACTCTTCATCTTGTGTTGAGACTTCG 31332687 >seq1108 Length=15764245 Score = 105 bits (116), Expect = 2e-17 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 206187 AACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGT 206246 ||| || ||||| || || ||||| | || || ||| || || || | || || Sbjct 5636459 AACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCCTCGGATACGATATAAAATGT 5636400 Query 206247 AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCC-GGACGCTCAAAGACTTATCTTCG 206305 |||| ||||| || | || ||||||||| || || || || |||| ||||| | Sbjct 5636399 AAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGTCGG-CAGAGACCGATCTTTG 5636341 Query 206306 CCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTA 206365 | || ||||| ||||||||||| | |||||| | || ||||| | || |||||||||| Sbjct 5636340 CTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAAGAGTCTA 5636281 Query 206366 CTCTTCACCTTGTTTTGAGACTTCG 206390 ||||||| |||| ||||||||||| Sbjct 5636280 CTCTTCATTTTGTGTTGAGACTTCG 5636256 Score = 104 bits (114), Expect = 6e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| |||| ||||||||||||||||| || | ||| ||||||| |||||| Sbjct 5636256 CGAAGTCTCAACACAAAATGAAGAGTAGACTCTTTTTGAATATTGTAGTCAGACAAAGTA 5636315 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | |||||||||||| ||||| || || ||||| Sbjct 5636316 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGAT 5636347 >seq4692 Length=25524837 Score = 104 bits (114), Expect = 6e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| ||||| |||||||||||||| || || | ||| ||||||| ||||||| Sbjct 22647593 CGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTC 22647652 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGAT 204843 | | |||||||||| ||||| || || ||||| Sbjct 22647653 CATGCATCTTCCAGTTGCTTGCCAGCAAAGAT 22647684 Score = 102 bits (112), Expect = 2e-16 Identities = 147/206 (71%), Gaps = 1/206 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || |||| | | ||||| | || || ||| || || || | ||| Sbjct 22647797 AAAACCCTTACGGGAAGACC-ATCACCCTCGATGTTGAACCCTCGGATACGATAGAAAAT 22647739 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || | |||||| ||||| Sbjct 22647738 GTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCTCAGCAAAGAGGGATCTTT 22647679 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||| | |||||||| | || ||||| | || || |||||| Sbjct 22647678 GCTGGCAAGCAACTGGAAGATGCATGGACTTTGTCTGACTACAATATTCAAAAGGAGTCT 22647619 Query 206365 ACTCTTCACCTTGTTTTGAGACTTCG 206390 |||||||| ||||| ||||||||||| Sbjct 22647618 ACTCTTCATCTTGTGTTGAGACTTCG 22647593 >seq2044 Length=20526591 Score = 102 bits (112), Expect = 2e-16 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || || || |||||| |||| Sbjct 13287425 AAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAGTGACACCATCGAGAAT 13287366 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| |||||| ||||| || ||||| ||| || ||| || || || ||||| Sbjct 13287365 GTCAAGGCAAAGATCCAAGATAAGGAAGGCATTCCTCCCGACCAGCAGAGGCTGATCTTT 13287306 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||||||||| | || || | || |||||| ||||||||||||| Sbjct 13287305 GCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACAACATCCAGAAAGAGTCC 13287246 Query 206365 ACTCTTCACCT 206375 || || ||||| Sbjct 13287245 ACCCTGCACCT 13287235 Score = 86.0 bits (94), Expect = 1e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 204767 AGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCCAGC 204826 ||||| || || ||||||||||||| || ||||||| || || | |||||||||||| Sbjct 13287235 AGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGC 13287294 Query 204827 TGCTTTCCGGCGAAGATAAGCC 204848 ||||||||||| ||||| |||| Sbjct 13287295 TGCTTTCCGGCAAAGATCAGCC 13287316 >seq9220 Length=42800024 Score = 96.9 bits (106), Expect = 8e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||||||| || || ||||||| ||||| || || |||| Sbjct 9830107 AGATCCAGGATAAGGAAGGAATTCCTCCTGATCAGCAAAGACCGATCTTTGCTGGCAAGC 9830048 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 | ||||||||||| | |||||| | || ||||| | || || |||||||||||| | | Sbjct 9830047 AACTGGAAGATGGACGTACTTTGTCTGACTACAATATTCAAAAGGAGTCTACTCTTTATC 9829988 Query 206375 TTGTTTTGAGACTTCG 206390 | || ||||||||||| Sbjct 9829987 TCGTGTTGAGACTTCG 9829972 Score = 95.1 bits (104), Expect = 3e-14 Identities = 84/105 (80%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 ||||||||||| || || | |||||||||||| || || | ||| ||||||| |||||| Sbjct 9829972 CGAAGTCTCAACACGAGATAAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAAAGTA 9830031 Query 204812 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATAAGCCGTTGTTGA 204856 | |||||||||||| ||||| || || ||||| | | ||| ||| Sbjct 9830032 CGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGA 9830076 >seq4803 Length=30560297 Score = 95.1 bits (104), Expect = 3e-14 Identities = 108/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| |||| || || || ||||||||| || ||| |||||||| ||||| Sbjct 25155372 GTAAAGGCCAAGACCCAGGATAAGGAAGGAATTCCTCCTGACCAGCAAAGACTGATCTTT 25155313 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || | |||| ||||||||||| | |||||| | ||||||||| || ||||||| Sbjct 25155312 GCTGTCGAGCAACTGGAAGATGGACGTACTTTGTCTGATTACAACACTCAAGAAGAGTCC 25155253 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| | ||| |||||| ||| Sbjct 25155252 ACTCTTCATCATGTGTTGAGATTTC 25155228 >seq3835 Length=881625 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || ||||| |||||| ||||| Sbjct 142587 AAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGTGACACCATCGAAAAT 142528 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| || || || || || ||||| ||| || ||| || || || ||||| Sbjct 142527 GTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAGCAGAGGCTCATCTTT 142468 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||||||||| | ||| | | || |||||| ||||||||||||| Sbjct 142467 GCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAACATCCAGAAAGAGTCG 142408 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 142407 ACCCTGCACCTGGT 142394 >seq2120 Length=3212655 Score = 84.2 bits (92), Expect = 5e-11 Identities = 106/145 (73%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 |||||| ||||| || || || |||||||| || || | || ||||| ||||| Sbjct 2164824 GTAAAGGCCAAGATCCAGGATAAGCAAGGAATTCCTCCTGATGAGCAGAGACTGATCTTT 2164765 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || ||||| ||||||||||| | || || | || |||||| | | || ||| | Sbjct 2164764 GCTGGCAAGCAACTGGAAGATGGATGTAC--TGTCTGACTACAACATTCGAAAGGAGCCC 2164707 Query 206365 ACTCTTCACCTTGTTTTGAGACTTC 206389 |||||||| ||||| ||||||||| Sbjct 2164706 ACTCTTCATCTTGTGCTGAGACTTC 2164682 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181647680610793