Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq2763 275 7e-69 seq667 154 2e-32 seq9111 145 9e-30 seq2220 113 5e-20 seq4360 105 8e-18 >seq2763 Length=6127229 Score = 275 bits (304), Expect = 7e-69 Identities = 251/317 (79%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 171069 CAGGTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCC 171128 || ||||||||||||||||| || | || |||| |||| || || ||| | | |||||| Sbjct 1487809 CAAGTGGTGACCCAGGATGAAAGAGAGCAGCTGTACACTCCTGCTTCCTTAAGATGCTCT 1487868 Query 171129 CTGCAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCA 171188 ||||| | | | ||||| || |||||||| || |||||||||| || | | ||| Sbjct 1487869 CTGCAAAATGCCCAGGAAGTCCTGATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCA 1487928 Query 171189 GAGAACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGAC 171248 || |||||| | || || ||| | |||| ||||||||| ||||||| || ||||||||| Sbjct 1487929 GAAAACATGGTCACCTTCAGCGAGAACCATGGGGTGGTGATCCAGCCTGCCTATAAGGAC 1487988 Query 171249 AAGATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACC 171308 ||||||||||| |||||||| |||||||||||| |||||||||| || ||||||| |||| Sbjct 1487989 AAGATAAACATTACCCAGCTGGGACTCCAAAACACAACCATCACCTTCTGGAATATCACC 1488048 Query 171309 TTAGAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCG 171368 | ||||| || ||||| |||| || ||||| || |||||||| |||||||| ||||| Sbjct 1488049 CTGGAGGATGAAGGGTGTTACATGTGTCTCTTCAATACCTTTGGTTCTGGGAAGATCTCA 1488108 Query 171369 GGGGTGGCCTGCCTCAC 171385 || ||||||||||| Sbjct 1488109 GGAACAGCCTGCCTCAC 1488125 >seq667 Length=10875949 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Minus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| |||||||| |||||||| ||||||||| |||||||||||| Sbjct 10101628 AGGGTTACCTGGGTTGCCAAGCCTTGTCTGAGATGATCCAGTTTTACCTGGAGGAGGTGA 10101569 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| || || ||||| ||| | ||| ||||| ||||||||||| |||| Sbjct 10101568 TGCCCCAAGCTGAGAACCAC------------GACCCAGACATCAAGGAGCATGTGAACT 10101521 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||| || || ||||| || || ||||||||||||| ||| Sbjct 10101520 CCCTGGGGGAGAATCTGAAGACGCTCAGGCTGAGGCTGCGGCGCTGT 10101474 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || || || |||||||| |||||||||||||| || || || ||||||| Sbjct 10099243 AGCTCCAAGAGAAAGGCGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 10099184 Query 178522 TAGAAGCTTACATGACAA 178539 ||||||| |||||||||| Sbjct 10099183 TAGAAGCCTACATGACAA 10099166 Score = 84.2 bits (92), Expect = 3e-11 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 178173 CAAATGAAGGACCAGCTGGACAACATGTTGTTAAATGGGTCCCTGCTGGAAGACTTTAAG 178232 ||||||||||| |||||||||||||| |||||||| | |||| ||||||| ||||||||| Sbjct 10101980 CAAATGAAGGATCAGCTGGACAACATATTGTTAAAGGAGTCCTTGCTGGAGGACTTTAAG 10101921 Query 178233 G 178233 | Sbjct 10101920 G 10101920 >seq9111 Length=11462142 Score = 145 bits (160), Expect = 9e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | |||||| |||||||| | ||||||||| |||||||| Sbjct 5684306 CTTCAGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAA 5684247 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 || || || ||||||||||| || || ||||||||||||||||| || ||||| | || Sbjct 5684246 AGGCACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTT 5684187 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCAT 147146 |||| || |||||||| ||| ||||| || ||||| ||||| Sbjct 5684186 CACCACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 5684142 >seq2220 Length=7499480 Score = 113 bits (124), Expect = 5e-20 Identities = 210/300 (70%), Gaps = 14/300 (5%) Strand=Plus/Plus Query 147283 GCCCCAAAGTGCCTCCACTGGAAGCCGTACACTGGCCCCAGGTCGCCGGGCTTTCTGTGC 147342 |||||||| |||||||| |||||||| || ||||| |||| ||| || | |||| | Sbjct 3702211 GCCCCAAAATGCCTCCA-TGGAAGCCATA-ACTGGACCCAAGTC-CCTTCTTCTCTGGCC 3702267 Query 147343 G-AGAAGCCCGCCCGCTTGAGAAACTCGGGGGACCCGTGGGCG-TCCCAGATGCCCACTC 147400 | |||| ||| | | | ||| || |||| || | || |||||||| ||||| Sbjct 3702268 GGAGAACCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTTGCAATCCCAGATTTTCACTC 3702327 Query 147401 CCTTGGCGGAGAGCTCCTTAGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCA 147460 |||||| || ||||| |||| | ||||| ||| ||| ||||| |||| |||||||| Sbjct 3702328 CCTTGGAAGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCA 3702387 Query 147461 AAACCCCCCTCCAAAAGACCCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCTCAGC---- 147516 ||| | |||| || || || | ||||| |||| ||| || || | || |||||| Sbjct 3702388 AAAACACCCTTCAGAA-ACACGTTTGGTTGTCA-CAGAGGAAATTCATCTCTCAGCTCTC 3702445 Query 147517 ---GAATACCTCGCCTGGTCCCCAAACACAGACAGCGTGCCCGTGCCCGTCCTGTCCTCC 147573 || | |||||| || || || ||||| ||||| |||||||| | ||| ||| Sbjct 3702446 AGGCTGTAGCGCGCCTGCATGCCGAATACCGACAGGGTGCCGGTGCCCGTGCGGTCGTCC 3702505 >seq4360 Length=7120179 Score = 105 bits (116), Expect = 8e-18 Identities = 118/158 (75%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| || | || || | ||||| | | ||| | | ||||||| Sbjct 1945926 GTATTCCCTGGTGTTCATGGTGGGCCTCTTGGGCAACGTGGTAGTGGTGATGATCCTCAT 1945985 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||| ||||||| | || ||||||||||||| |||| ||||||||||| || || Sbjct 1945986 AAAATACAGGAGGCTCCGAATTATGACCAACATCTACCTGCTCAACCTGGCCATTTCGGA 1946045 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACT 8767 |||||| | | |||||||| || || ||||| |||| Sbjct 1946046 CCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 1946083 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||| |||| ||| | |||| | |||| || ||||||| |||| ||||| | Sbjct 1885582 GTACTCCTTGGTATTTGTCATTGGCGTGGTTGGAAACCTCCTGGTGGTCCTGGTCCTTGT 1885523 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | ||||||||||||| | |||||||||||||| ||| | ||||||||| || ||| Sbjct 1885522 GCAATACAAGAGGCTCAAAAACATGACCAACATCTACCTCCTGAACCTGGCCATTTCTGA 1885463 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCG 8775 |||||| | | ||||| || ||||| | ||| ||| | | ||| Sbjct 1885462 CCTGCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCG 1885417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583404612271200