Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4803 109 5e-19 seq2044 109 5e-19 seq3835 102 7e-17 seq888 100 3e-16 seq9220 93.3 4e-14 seq5683 93.3 4e-14 seq4692 89.7 5e-13 seq8115 87.8 2e-12 >seq4803 Length=30560297 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35511 CACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCA 35570 |||||| | ||||||| | ||| | ||| |||||||||||||||| | || | || Sbjct 28369773 CACCACAAAGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACA 28369832 Query 35571 AGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAA 35630 | || || |||| ||||| |||| || ||||| |||| | ||||| || | ||||| Sbjct 28369833 AAGTACGTCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAA 28369892 Query 35631 CGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACCT 35690 | ||||| ||| |||||| ||| | | || | |||| || | ||| |||| Sbjct 28369893 TTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCT 28369952 Query 35691 CCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 | | ||||| || || ||| | | ||||||||| || ||||||||| || Sbjct 28369953 CAAGGGTGATAGTCTTCCCCCTTAGAGTTTTCACGAAAATCTGCATTTTG 28370002 >seq2044 Length=20526591 Score = 109 bits (120), Expect = 5e-19 Identities = 139/189 (74%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35548 CTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATAT 35607 |||||| |||||||| |||| || ||| ||| | || ||||||||||| || ||||| || Sbjct 13286602 CTTTTGGATGTTGTAGTCGGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGAT 13286661 Query 35608 CAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGC 35667 ||||| ||||||||| | ||| | || |||||||| || | ||||||| ||| Sbjct 13286662 CAACCTCTGCTGGTCAGGAGGGATGCCTTCCTTGTCTCTGGAC-TTTGCTTTGACGTTCT 13286720 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | ||||| || | || ||||| | ||||| || || || |||| || ||||| | Sbjct 13286721 CGATGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC-GA 13286779 Query 35728 TATCTGCAT 35736 |||||||| Sbjct 13286780 GATCTGCAT 13286788 Score = 109 bits (120), Expect = 5e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | || ||| ||| | || ||||||||||| || ||||| Sbjct 13287249 CTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAA 13287308 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| || ||||||||| | ||||| || ||||| || ||||||| ||| | | | Sbjct 13287309 GATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGATCTTTGCCTTGACATT 13287368 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || | || ||||| | ||||| || || || || | || ||||| Sbjct 13287369 CTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTCAC 13287428 Query 35725 AAATATCTGCATT 35737 || ||||||||| Sbjct 13287429 GAAGATCTGCATT 13287441 >seq3835 Length=881625 Score = 102 bits (112), Expect = 7e-17 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 ||| || || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 142411 CTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 142470 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | |||| || ||||| ||| ||| || ||||| | | Sbjct 142471 GATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATTTTGGCCTTCACATT 142530 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 142531 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 142590 Query 35725 AAATATCTGCATTCTG 35740 || ||||||||| || Sbjct 142591 GAAGATCTGCATTTTG 142606 Score = 98.7 bits (108), Expect = 9e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 142183 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 142242 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || ||| |||||| ||||| | | Sbjct 142243 GATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCCTGGATCTTGGCCTTCACATT 142302 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | ||||| |||| ||||| || || || |||| || ||||| Sbjct 142303 TTCGATGGTGTCACTGGGCTCCACTTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 142362 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 142363 GAAGATCTGCAT 142374 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || | || ||||||||||| || ||||| Sbjct 141955 CTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAA 142014 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || ||||||||| | || | || || || || |||||| ||||| | | Sbjct 142015 GATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGGATCTTGGCCTTCACATT 142074 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||| || | |||||||| | ||||| || || || |||| || ||||| Sbjct 142075 TTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCAC 142134 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 142135 GAAGATCTGCAT 142146 >seq888 Length=8072957 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | ||||| || | ||| | ||| |||||||||||| ||||| || | | Sbjct 5993347 CCACCACGAAGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 5993406 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| |||| | ||||| || | |||| Sbjct 5993407 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 5993466 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| |||||| ||| | | || | | ||| || | ||| || Sbjct 5993467 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACT 5993526 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | | ||||| || || ||||| | ||||||| || ||||||||| Sbjct 5993527 TTGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATT 5993574 >seq9220 Length=42800024 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | || | ||| |||||||||||| ||||| || | | Sbjct 9829966 CCACCACGAAGTCTCAACACGAGATAAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 9830025 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || || | || ||||| ||||| || ||||| ||| | ||||| || | |||| Sbjct 9830026 AAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCGGTCTTTGCTGATCAGGAGGA 9830085 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | ||| || | ||| || Sbjct 9830086 ATTCCTTCCTTATCCTGGATCTCGGTCTTTACATTTTATATCGTATCCGAGGGTTCAGCC 9830145 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | ||||||| || ||||||||| || Sbjct 9830146 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCATGAAAATCTGCATTTTG 9830196 >seq5683 Length=19003911 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | |||||||| || | || ||| || || |||||||| || | Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || |||||||| || || |||||||||| ||||||||||| | || Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| | ||| ||| || || | | | | | ||||| || | || || Sbjct 4210582 ATACCCTCCTTGT-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGAC 4210640 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||| | ||||| ||||| |||| | || |||||||| |||||||| Sbjct 4210641 CTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCAT 4210688 >seq4692 Length=25524837 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||| ||||| || | | Sbjct 22647587 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGAC 22647646 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 || || | | || ||||| ||||| || ||||| ||| | ||||| | | |||| Sbjct 22647647 AAAGTCCATGCATCTTCCAGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAGGA 22647706 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||||| ||| | | || | | ||| || | ||| || Sbjct 22647707 ATTCCTTCCTTATCCTGGATCTCGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACA 22647766 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTCTG 35740 || | ||||| || || ||||| | ||||||| || ||||||||| || Sbjct 22647767 TCGAGGGTGATGGTCTT-CCCGTAAGGGTTTTCATGAAAATCTGCATTTTG 22647816 >seq8115 Length=33050683 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/228 (68%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | |||||||| | ||| | ||| |||||||||||||||||| || | | Sbjct 31332693 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAC 31332634 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || |||| |||||| || ||||| |||| | ||||| || | |||| Sbjct 31332633 A-----------TCTTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGA 31332585 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||| ||| ||| || ||| | | || | | |||| | ||| ||| Sbjct 31332584 ATTCCTTCCTTATCCTGGATATTGGCCTTTACATTTTCTATTGTGTTCAAGGGTTCAACC 31332525 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 || | || || || || || || || |||||||| || ||||||||| Sbjct 31332524 TCAAGGGTAATGGTCTTCCCTGTAAAGGTTTTCACGAAAATCTGCATT 31332477 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450729175959640