Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5683 109 6e-19 seq3835 105 7e-18 seq8115 100 3e-16 seq2044 95.1 1e-14 seq888 87.8 2e-12 seq4803 84.2 2e-11 seq10880 82.4 8e-11 >seq5683 Length=19003911 Score = 109 bits (120), Expect = 6e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| || |||||||| ||||| || ||||| || || || ||||||||||| Sbjct 4210462 CCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAG 4210521 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| ||||||||| || || || Sbjct 4210522 AGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGG 4210581 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || ||||||||||| |||||| || | ||||| | || || Sbjct 4210582 ATACCCTCCTTGTCTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACC 4210641 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || |||||||| || | | || || || || || ||||| || Sbjct 4210642 TCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 4210691 >seq3835 Length=881625 Score = 105 bits (116), Expect = 7e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || || || || || || ||||||||||| | Sbjct 142376 CCACCTCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAA 142435 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 142436 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGA 142495 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || ||||| || || || | ||||| | ||||| Sbjct 142496 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142555 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || ||||| | || || ||||| || ||||||||| Sbjct 142556 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTG 142606 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || |||| || ||||| || || || ||||| || ||||||||||| | Sbjct 142148 CCACCTCTCAGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 142207 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 142208 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142267 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || || | ||||| | ||||| Sbjct 142268 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACT 142327 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 142328 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || || || ||||| || ||||||||||| Sbjct 141920 CCACCCCTCAGGCGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAG 141979 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| ||||||||||| || | | |||||| ||||| || Sbjct 141980 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGG 142039 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| ||||| || || || || || | ||||| | ||||| Sbjct 142040 ATGCCTTCTTTATCTTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 142099 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || ||||| | || || ||||| || ||||| Sbjct 142100 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142146 >seq8115 Length=33050683 Score = 100 bits (110), Expect = 3e-16 Identities = 154/220 (70%), Gaps = 11/220 (5%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 |||| |||||| || || || || || |||||||||||||||||||| || Sbjct 31332684 AGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAGTC----------AGA 31332635 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 | || || | ||| ||||| ||||| |||| | |||||||| || || || ||||| Sbjct 31332634 CA-TCTTCCAACTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTCC 31332576 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| | | ||| || || || ||| Sbjct 31332575 TTATCCTGGATATTGGCCTTTACATTTTCTATTGTGTTCAAGGGTTCAACCTCAAGGGTA 31332516 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 ||||| || || || || ||||| |||||||| ||||||| Sbjct 31332515 ATGGTCTTCCCTGTAAAGGTTTTCACGAAAATCTGCATTT 31332476 >seq2044 Length=20526591 Score = 95.1 bits (104), Expect = 1e-14 Identities = 163/229 (71%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCG-CAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCC 134545 || |||||||| || || ||| ||||| || |||||| |||||| |||||||||||| Sbjct 13286565 CCACCTCTGAGACGGCAGCACCAGGTGCAGGGTGGAT--CTTTTGGATGTTGTAGTCGGA 13286622 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 | |||| | || || ||||| || || ||||| ||||| | |||||| || || || Sbjct 13286623 CAGGGTGCGCCCATCTTCCAGCTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCAGGAGG 13286682 Query 134606 TATGCCTTCTTTTTCT-TGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 |||||||| || ||| || | ||| ||||| || | ||||||| | || | Sbjct 13286683 GATGCCTTCCTTGTCTCTGGA-CTTTGCTTTGA-CGTTCTCGATGTGTCACTGGGCTCGA 13286740 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 | ||||| || ||||| || || || | || || ||| | || ||||| Sbjct 13286741 CCTCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG-AGATCTGCAT 13286788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134507 GAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAG 134566 |||||| || ||||| || || || ||||||||||| | |||| | || || || Sbjct 13287234 GAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTCCAG 13287293 Query 134567 CTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAAT 134626 ||| || || ||||| |||| | |||||| ||||| || |||||||| || ||||| || Sbjct 13287294 CTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTATCTTGGAT 13287353 Query 134627 TTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACC 134686 ||| ||||| || | ||||| | || || || || || ||||| || || Sbjct 13287354 CTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCC 13287413 Query 134687 GGTTAAAGTTTTAACGAAAATTTGCATT 134714 || | || || ||||| || |||||| Sbjct 13287414 AGTGAGGGTCTTCACGAAGATCTGCATT 13287441 >seq888 Length=8072957 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/222 (69%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||| || || || || || || ||||||||||| |||||||| | ||| || | Sbjct 5993356 AGTCTCAAAACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGACAA-AGTACG 5993414 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 || || || || ||||| ||||| |||| | |||||||| || || || ||||| Sbjct 5993415 TCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 5993474 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || | || || || | ||| || | ||| || Sbjct 5993475 CTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAACTTTGAGGGT 5993534 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 ||||| || || || | ||||| | |||||| |||||||| Sbjct 5993535 GATGGTCTTCCCCGTAAGGGTTTTCAGGAAAATCTGCATTTT 5993576 >seq4803 Length=30560297 Score = 84.2 bits (92), Expect = 2e-11 Identities = 154/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTC-GCCAACGGTGTG 134554 |||| ||||| || || || || | ||||||||||||||| |||| | ||| || | Sbjct 28369781 AGTCTCAACAAAAGATGAAGAGTAGGCTCCTTTTGAATGTTGCAGTCAGACAA-AGTACG 28369839 Query 134555 AGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTC 134614 ||| || || || | ||| ||||| |||| | |||||||| || || || ||||| Sbjct 28369840 TCCGTCTTCCAGTTGCTCGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTC 28369899 Query 134615 TTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGT 134674 || || || || || || || || || || || | ||| || || || || Sbjct 28369900 CTTATCCTGGATCTTGGCCTTTACATTTTCTGCCGTATCTGAGGGTTCAACCTCAAGGGT 28369959 Query 134675 AATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || ||| |||||| |||||||| ||||||||| Sbjct 28369960 GATAGTCTTCCCCCTTAGAGTTTTCACGAAAATCTGCATTTTG 28370002 >seq10880 Length=11791330 Score = 82.4 bits (90), Expect = 8e-11 Identities = 57/65 (88%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 21436 ACCCGTCTTTCAAAGAAATTTGTTTTTCCTTCTAGTGCAATGTTTTTCATAAAATTAAAA 21495 || ||| | ||||||||||||||||||||||||| | |||||||| |||||||| |||| Sbjct 10261405 ACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCCATAAAATCAAAA 10261464 Query 21496 GGATT 21500 ||||| Sbjct 10261465 GGATT 10261469 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505326172251160