Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1989 257 2e-63 seq2631 196 7e-45 seq4087 163 4e-35 seq1678 125 1e-23 seq10880 120 4e-22 seq7011 120 4e-22 seq6459 114 2e-20 seq1330 96.9 5e-15 >seq1989 Length=5200062 Score = 257 bits (284), Expect = 2e-63 Identities = 619/934 (66%), Gaps = 16/934 (2%) Strand=Plus/Minus Query 39270 TTTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTT 39326 |||| |||||| |||| || | |||| ||| ||| | | |||| |||||||| Sbjct 4401919 TTTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGACTCGACACCACTCCCATCC 4401860 Query 39327 TTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTT 39386 | || || || || | ||||| || || || || ||| || ||| ||||| | Sbjct 4401859 TCTGATACTCCTTTACTCTCTTCTCAAAGAAGTTCGT-----CTTTCAGTGAAATATTCT 4401805 Query 39387 CCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCA 39446 |||| || ||||| || || | | | | || |||| || | ||| | || Sbjct 4401804 CCATAAAGTCAAATGGGTTCTCTACTCTGAAAACCTTGCTAAAACCCAGTTCCGGCATG- 4401746 Query 39447 ATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTT 39506 ||| ||||| ||| | || |||||| ||||| | |||||||| || ||||| | Sbjct 4401745 -TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCT 4401687 Query 39507 TAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCG 39566 | || || | ||||| || || || || | ||| || || || | | ||| | Sbjct 4401686 TCACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTC 4401627 Query 39567 ATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGT 39626 | ||| | ||| || ||| || | || || ||||| | ||| || || | Sbjct 4401626 CTCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAAAT 4401567 Query 39627 CACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTA 39686 |||| |||| |||||||||| |||||| | ||| || ||||| ||||| |||||||| | Sbjct 4401566 CACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCA 4401507 Query 39687 GACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTA 39746 | || || || |||||||| ||||| | |||||| | |||||||||| ||||||| Sbjct 4401506 GTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAGA---TGCCTTCCG 4401450 Query 39747 CTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTAT---GTATCCACTTCT 39803 |||| ||||| | |||| | || || || | | | || | ||||| | | Sbjct 4401449 CTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGCTTTGTCCCCAATCCAGTGCA 4401390 Query 39804 GTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAAT 39863 |||||||| || |||||| ||||||||||| ||||| || ||||| ||| || | | Sbjct 4401389 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 4401330 Query 39864 GTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGA 39923 || | | |||||| | || || || || | | |||||||||| | ||||| | Sbjct 4401329 CCCTTACTTTGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAATGTA 4401270 Query 39924 TGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTG 39983 ||||||| || || || || || || | ||||| | ||||| || | || || ||| Sbjct 4401269 TGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTT 4401210 Query 39984 AACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCA 40043 | | ||| ||| |||| ||| |||| ||||| |||||||| || |||| || ||| Sbjct 4401209 GGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAAACCA 4401150 Query 40044 ATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTT 40103 ||||| ||||||| | | || ||||| ||| | ||||| || || | Sbjct 4401149 GAACATGGGATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCT 4401090 Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163 | || | || || || || || ||||| || || || || ||||| || ||||| | || Sbjct 4401089 TGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATACATCTGCC 4401030 Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197 | |||||| | || | | || || || ||||| Sbjct 4401029 AGATATCATGGTACTCGGTGGGGAAGATGACAAA 4400996 >seq2631 Length=7319754 Score = 196 bits (216), Expect = 7e-45 Identities = 307/429 (72%), Gaps = 13/429 (3%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || |||| ||| |||| |||||||| || ||||| | ||| || ||||||||||| Sbjct 2079010 GCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAG 2078951 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 |||||||| || || | || ||||||| ||||| |||||||| ||||||||||| Sbjct 2078950 GCCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAA 2078891 Query 39736 GATGCCTTCTACTGCTGCAAA---TGCAACAAG-TCTCTCTCCGTAACTTGTATCATTAT 39791 | ||| ||| ||| ||||| ||||||| | |||| | ||||| | | | || Sbjct 2078890 GGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCT-TTGTTCC 2078832 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| | ||||| | || |||||||| |||| |||||||||| | || |||| Sbjct 2078831 CAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTCCAATGGCAT 2078773 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 | |||||| | | |||| | |||||||| || ||| || || | ||||||| | Sbjct 2078772 TGAAGAGAAATTCCCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTA 2078715 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTG-CTTCAGTA 39970 | || ||||| |||||||| | || || || || || ||||| || | ||| ||| Sbjct 2078714 TGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTGTA 2078655 Query 39971 ATTTGTA-CCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT-TCCATCACTAG 40028 || || | |||||||||| | ||| |||| ||||||| |||||| ||||||| Sbjct 2078654 ATCTGAATTTTCTGAACAAA--TTGTCCACCAAGTTTTCATCCACTATCCCCATCACATC 2078597 Query 40029 CGGCAAAAA 40037 | ||||||| Sbjct 2078596 CTGCAAAAA 2078588 >seq4087 Length=903614 Score = 163 bits (180), Expect = 4e-35 Identities = 252/358 (70%), Gaps = 5/358 (1%) Strand=Plus/Minus Query 39818 TTCTTCTTTACACA----AGGCATTGTTTC-TATAGCATTAAAGAGATAATGTTTTTCAT 39872 |||||||| || || |||||| ||||| ||| | ||| | || | | |||| | Sbjct 28129 TTCTTCTTGACCCAGCGAAGGCATCGTTTCATATGGGATTGAGAGGAAATTCCCTTTCTT 28070 Query 39873 CACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAA 39932 |||||| | || || || || | |||||||||||||| ||||| |||||||| | Sbjct 28069 TGGGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCA 28010 Query 39933 TCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATC 39992 | || || || || || || ||||| | ||||| ||||| || || ||| | ||||| Sbjct 28009 TGGCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 27950 Query 39993 TTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTT 40052 ||| |||| |||||||| ||||| ||||| || || ||||| || |||| ||||| Sbjct 27949 GCTCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGA 27890 Query 40053 TAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATAT 40112 ||||||||| | || ||||| ||| | ||||| | || || || || | | Sbjct 27889 ATATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGACAGGT 27830 Query 40113 CTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 | || || || || ||||| || || ||||| ||||| || ||||| | ||| ||||| Sbjct 27829 CCACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATC 27772 >seq1678 Length=10304083 Score = 125 bits (138), Expect = 1e-23 Identities = 102/124 (82%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||||||||| || || | ||| || ||||||||||| |||||||| || || || || | Sbjct 209199 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 209258 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| ||||| | |||||||| || ||||||||||||||||| ||||| ||||| | Sbjct 209259 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 209318 Query 39759 CAAC 39762 | || Sbjct 209319 CTAC 209322 >seq10880 Length=11791330 Score = 120 bits (132), Expect = 4e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700 |||||||| || || | ||| || ||||| |||||||| ||||| ||||| | ||| || Sbjct 10272723 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 10272782 Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760 ||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| || Sbjct 10272783 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 10272842 Query 39761 ACAAGTCTCTCTCC 39774 || | ||| || || Sbjct 10272843 ACCACTCTTTCCCC 10272856 >seq7011 Length=47169369 Score = 120 bits (132), Expect = 4e-22 Identities = 248/365 (68%), Gaps = 7/365 (2%) Strand=Plus/Minus Query 37338 TTATTTCAGTCCTGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACCATCTAGAGATTG 37397 ||| ||| ||| || || ||||| || | || || || || |||| | || ||| Sbjct 6213785 TTAATTCTTTCCAGTGGAACCAAAACCACCTGAACCCCTTTCGGTGTCATCCAAAGCTTG 6213726 Query 37398 TACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCGCC 37457 ||||| | | || |||||| | || |||| | || ||||| || |||| ||| || Sbjct 6213725 AACTTCTTCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACC 6213666 Query 37458 CGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTCCAATATTCCCCCT 37517 | || | || ||| || ||| ||| ||| | ||| | || |||| ||| || || Sbjct 6213665 GTTTTTGACTTCAAACTTTTCTTTGCCAAAATTAAACAGTACAACACCAACATTTCCTCT 6213606 Query 37518 ATAATCTTCATCGATTACTCCGCCTCCTACATCAATA---CCTTTTAGAGACAAACCCGA 37574 |||||||||||| || || || |||||||||||||| |||| || ||| || || Sbjct 6213605 ATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTGCAGCCAAGCCTGA 6213546 Query 37575 TCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGAATATCTGTTTTAAT 37634 | ||||||| |||||||||||| || | | ||| |||| || ||||| | Sbjct 6213545 CCGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGAATGTCCGTTTTCA- 6213487 Query 37635 CAATTGTCTTTCTCC--AGGAAGGATGGTATAATCGTACGCGCTATATAAATCATATCCC 37692 ||| | |||||||| ||| | || || ||||| || || || || | || || ||| Sbjct 6213486 CAAGAG-CTTTCTCCATAGGTGGTATTGTGTAATCATAGGCACTGTACAGGTCGTAGCCC 6213428 Query 37693 GCGGC 37697 ||||| Sbjct 6213427 GCGGC 6213423 >seq6459 Length=15015882 Score = 114 bits (126), Expect = 2e-20 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 70334 CACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAA 70393 |||| || | ||| |||||||| |||||||| || || | || || |||||||| || | Sbjct 12298259 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 12298200 Query 70394 TAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTA 70453 ||||||||||||| || | ||||| | || || ||| |||| ||||| || ||||||| Sbjct 12298199 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 12298140 Query 70454 ATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501 ||| | || || || || | || | ||||| || |||||||||| Sbjct 12298139 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCATGG 12298092 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 ||||||||||| || ||||| |||||||||||||| | || |||||||||| | | Sbjct 12315203 ACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACGCTGC 12315144 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 ||||| |||||||| || || || | ||| || || || | || || ||||||| || Sbjct 12315143 TCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCAAGGC 12315084 Query 69715 TCTAGATATATCGC 69728 || || || || || Sbjct 12315083 TCCAGGTAAATAGC 12315070 >seq1330 Length=10395599 Score = 96.9 bits (106), Expect = 5e-15 Identities = 217/321 (68%), Gaps = 10/321 (3%) Strand=Plus/Minus Query 37385 CATCTAGAGATTGTACTTCATTCAGATCAGGATAATATATACGTTGATAGATTAGCTGAG 37444 |||| | || ||| ||||| | | || |||||| | || |||| | | || ||||| | Sbjct 2358133 CATCCAAAGCTTGAACTTCTTCTATTTCCGGATAAAAAATCCGTTCACAAATGAGCTGTG 2358074 Query 37445 CTATTCTATCGCCCGTATTTATTTTAAAATTACATTTTCCATTATTTATCAGAATGACTC 37504 | |||| ||| | | | || | || ||| || ||| ||| || | ||| | || | Sbjct 2358073 CAATTCGATCACACTTTTTGACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACAC 2358014 Query 37505 CAATATTCCCCCTATAATCTTCATCGATTACTCCGCCTCCTACATCAATA----CCTTTT 37560 ||| ||| || |||||||||||||| || || || |||||||||||||| ||| Sbjct 2358013 CAACATTTCCTCTATAATCTTCATCTATGACACCAGCTCCTACATCAATAAAGTGTTTTG 2357954 Query 37561 AGAGACAAACCCGATCTAGGAGCTATTCTTCCATAACAAAATTTGGGCATAGACATCCGA 37620 || ||| || || ||||||| |||||||||||| || | | ||| || Sbjct 2357953 CAAGCCAAGCCTGACTGTGGAGCTACTCTTCCATAACACCCAGAAGGGAGCGCTATCTGA 2357894 Query 37621 ATATCTGTTTTAATCAATTGTCTTTCTC--CAGGAAGGATGGTATAATCGTACGCGCTAT 37678 || || ||||| | ||| | ||||||| |||| | || || ||||| || || || | Sbjct 2357893 ATGTCCGTTTTCA-CAAGAG-CTTTCTCCACAGGTGGTATTGTGTAATCATAGGCACTGT 2357836 Query 37679 ATAAAT--CATATCCCGCGGC 37697 | | | | || |||||||| Sbjct 2357835 ACAGGTCCCGTAGCCCGCGGC 2357815 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686810632146120