Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq1989 206 2e-48 seq4087 176 4e-39 seq1678 113 4e-20 seq2089 91.5 1e-13 seq2353 89.7 4e-13 seq10880 86.0 5e-12 >seq1989 Length=5200062 Score = 206 bits (228), Expect = 2e-48 Identities = 596/899 (66%), Gaps = 40/899 (4%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | || || | | || ||||| || ||||| ||||| || || || | || Sbjct 4400996 TTTGTCATCTTCCCCACCGAGTACCATGATATCTGGCAGATGTATAAGAAGGCGGAAGCT 4401055 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGAC--TTAGCACATTGGATTGCAT 43817 || || ||||| || || || || || || | || ||| || |||| | ||| | | | Sbjct 4401056 TCCTTCTGGACCGCGGAGGAGGTGGACCTGTCCAAGGACATTTGGCAC-TGGGAATCCCT 4401114 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || || | || | | |||||||||| ||| ||| || |||| || || || | Sbjct 4401115 GAAGCCCG-AGGAGAGAGATTTTATATCCCATGTTCTGGTTTTCTTTGTAGCAAGTGATG 4401173 Query 43878 GGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCAC 43937 | ||||| |||| ||| ||||| || | | ||||||||||| | ||||||| | Sbjct 4401174 GCATAGTAAATGCAAACTTGGTGGAGCGATGTAGCCAAGAAGTTCAGGTGACAGAAGCCC 4401233 Query 43938 GATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTC 43997 | ||||| | ||| || ||||||||||| ||||| || ||||| | |||||| ||| | | Sbjct 4401234 GCTGTTTCTGTGGCTTCCAAATTGCCATGGAAAACATACATTCTGGAATGTATAGTTTCC 4401293 Query 43998 TGATAGATACGTACATCAAAGATGGGCACGAGAAGCA---TCGATTGTTTAATGCGATAG 44054 | || || || ||||| |||||| | | | | | ||| || ||||| || | Sbjct 4401294 TTATTGACACTTACATAAAAGATCCCAAAGTAAGGGAATTTCG---CTTCAATGCCATTG 4401350 Query 44055 AAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGA-TAAATTCAAA- 44112 |||| | ||| | || | ||||| |||||| | | |||| | |||| Sbjct 4401351 AAACGATGCCTTGTGTCAAGAAGGCGGCAGATTGGGCCTTGCACTGGATTGGGGACAAAG 4401410 Query 44113 -TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAG 44171 | | | | ||| ||||| |||| | ||||| | | |||||||| ||||||| | Sbjct 4401411 CAGCTACCTATGGGGAACGTGTTGTAGTCTTTGCTGCAGCGGAAGGCA---TCTTTTCTG 4401467 Query 44172 GATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTT 44231 | | ||||| | ||||| ||| | ||||||||||| |||||||||| | || |||| Sbjct 4401468 GTTATTTTGCATCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACCTTTT 4401527 Query 44232 CAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTG 44291 | ||||| | || ||| | ||||| || ||||| || |||||||||||| || | || Sbjct 4401528 CCAATGAACTTATTAGTGGAGATGAGGGTTTACACTGTGATTTTGCTTGCCTGAT-GTTC 4401586 Query 44292 GAT-ATCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGATATTGTTGTAGAGGCA 44350 || | || | | || | | || | | ||| ||| | || | || | | || Sbjct 4401587 AATCACCTGGCACAC-AAACCACTGGAGG--AGAGAATAAGAGGAAGAATTATCAATGCT 4401643 Query 44351 GTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAA- 44409 || ||||||||| ||||| | || || || ||||| || | || || ||||| Sbjct 4401644 GTTCGGATAGAACAGGAATTCCTCACTGAGGCCTTGCCTGTGAAGCTCATTGGGATGAAT 4401703 Query 44410 TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTAC-TTTTGGAACTGG 44468 || || | | ||||| ||||| ||||| | | ||||| | || | |||||||| Sbjct 4401704 TGCAC-TCTAATGAAGCAATACATTGAGTCTGTGGCAGACAG---ACATGCCGGAACTGG 4401759 Query 44469 GTTGCGATAAACACTATATT----GTACAAAACCCGTTTGATTTTATGGAAAATATTTCG 44524 ||| | | || | || ||| | ||||| ||||| |||||||| |||||||| Sbjct 4401760 GTT----TTAGCAAGGTTTTCAGAGTAGAGAACCCATTTGACTTTATGGAGAATATTTCA 4401815 Query 44525 TTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTGGAGAATATCAGCGAATGGGCGT 44583 || ||| || ||||| ||||| || | || || |||||| | ||||| || Sbjct 4401816 CTGAAAG-----ACGAACTTCTTTGAGAAGAGAGTAAAGGAGTATCAGAGGATGGGAGT 4401869 >seq4087 Length=903614 Score = 176 bits (194), Expect = 4e-39 Identities = 251/347 (72%), Gaps = 6/347 (2%) Strand=Plus/Plus Query 43677 TGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGC 43736 |||| | |||||| || | |||||| | || | || | || || || || |||| Sbjct 27722 TGCTGAGAGAAAACCCCCGCCGCTTTGTCATCTTCCTCATCGAGTACCACGATATCTGGC 27781 Query 43737 AAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAG 43796 | ||||| || || || |||| || || ||||| || || || || || || | || | Sbjct 27782 AGATGTATAAGAAGGCGGAGGCTTCCTTCTGGACCGCCGAGGAGGTGGACCTGTCCAAGG 27841 Query 43797 ACTT--AGCACATTGGATTGCATTAAAACCACAAGAAAAACATTTTATATCTTTGGTTTT 43854 || | ||||| | ||| | | | || || | || | | ||||||||| ||| | Sbjct 27842 ACATTCAGCAC-TGGGAATCCCTGAAGCCCG-AGGAGAGATATTTTATATTCCATGTTCT 27899 Query 43855 GGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCA 43914 ||| || ||||| || ||||| || ||||| |||||||| ||||| || ||| || Sbjct 27900 GGCTTTCTTTGCAGCAAGCGATGGCATAGTAAATGAAAACTTGGTGGAGCGATTTAGCCA 27959 Query 43915 AGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||||| |||| ||||||| || ||||| ||||| || ||||||||||| ||||| | Sbjct 27960 AGAAGTTCAGATTA-CAGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACA 28018 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 | ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 28019 TACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 28065 >seq1678 Length=10304083 Score = 113 bits (124), Expect = 4e-20 Identities = 92/109 (84%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 43913 CAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAA 43971 ||||||||||| ||||| |||||| || ||||| ||||| || ||||||||||| ||||| Sbjct 211411 CAAGAAGTTCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 211353 Query 43972 TATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||| |||||||| || || || ||||| |||||| Sbjct 211352 CATACATTCTGAAATGTATAGTCTTCTTATTGACACTTACATAAAAGAT 211304 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 || ||||| | || || ||||| | ||||||||||| |||||||| || || ||||| Sbjct 209334 GGTGAACGTGTCGTAGCCTTTGCTGCAGTGGAAGGCATCTTCTTTTCCGGTTCTTTTGCA 209275 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| |||||||||| | || ||||| ||||| | Sbjct 209274 TCGATATTCTGGCTCAAGAAACGAGGACTGATGCCTGGCCTCACATTTTCCAATGAACTT 209215 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 209214 ATCAGCAGAGATGA 209201 >seq2089 Length=3630585 Score = 91.5 bits (100), Expect = 1e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 77394 TCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAACATGC 77453 |||| || || | |||||| | | ||| || ||||| | |||||| || || ||||| | Sbjct 1535283 TCCACCCATTTTCCTTCCAACTTTGAACACAGTTAGTTATACCATTTATAGTAAACATAC 1535342 Query 77454 TGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCTGAGCTTGTTGCAGTGCTTTGG 77513 ||||||| || | ||||| || |||| || | ||| ||||||| | | |||| Sbjct 1535343 TGTCTGTATACAGAACCAGTTTACTGATGTTTTGAGCCTTTGCTTGTTCAATGGTTTTGC 1535402 Query 77514 ATGCAGCCTGGATTTCAGCGCGCTGGTTTGTCTGTTGCCCCACAAGTC 77561 | || || |||||||| || | |||||||||||| |||| ||||| Sbjct 1535403 AGGCTGCATGGATTTCTGCTCTTTGGTTTGTCTGTCGCCCAGGAAGTC 1535450 >seq2353 Length=2157725 Score = 89.7 bits (98), Expect = 4e-13 Identities = 177/260 (68%), Gaps = 8/260 (3%) Strand=Plus/Plus Query 47230 AGGACTTTATGAAAAATCAGGGAAAATATTATTTCTCGGGTTAGACAATGCAGGAAAAAC 47289 |||||| || | |||| || ||| | |||| | || || ||||||||||| ||||| Sbjct 100070 AGGACTCTACAAGAAATTTGGAAAACTTGTATTCTTGGGTTTGGACAATGCAGGCAAAAC 100129 Query 47290 GGCATTACTCCACATGCTCAAA---TACA-ATTGCATGAAAGAGCATAACCCTACATTAC 47345 | | || | |||||||||| ||| |||| | || ||| || ||| ||| Sbjct 100130 CACTCTTCTTCGCATGCTCAAAGATGACAGATTGGGTCAA----CATGTTCCAACACTAC 100185 Query 47346 ATCCGACCTCTGAACAACTAACAATTGCTGGCATAACATTTAGCACATTTGATTTAGGAG 47405 ||| ||| || ||| | |||| ||||||||| || || |||| || |||||| | || | Sbjct 100186 ATCTGACATCAGAAAAGCTAATAATTGCTGGAATGACTTTTACAACTTTTGATCTTGGTG 100245 Query 47406 GACACATTCAAGCGCGTAGAATGTGGCAAAATTATTTTCATGTCGTTGATGCTATAGTTT 47465 |||||| ||| | || | || |||||||| | | | || ||| || |||| Sbjct 100246 GACACAAGCAACCATGTCAGGTTTGAAAAAATTATCTCCCAGGAATTAATGGGATTGTTT 100305 Query 47466 ATATTGTAGACTGTGCAGAT 47485 | | || |||| ||||||| Sbjct 100306 TTCTGGTGGACTCTGCAGAT 100325 >seq10880 Length=11791330 Score = 86.0 bits (94), Expect = 5e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 10261471 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGAAAAACAAATTTCTTTGAGA 10261412 Query 44553 AACGCGTTGGAGAATATCAGCG 44574 |||| ||| || |||||||| Sbjct 10261411 AACGAGTTTCGGAGTATCAGCG 10261390 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397400618605165