Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq2220 129 5e-25 seq9111 125 6e-24 seq5463 113 4e-20 seq8779 100 2e-16 seq6570 95.1 1e-14 seq5102 82.4 6e-11 seq3259 82.4 6e-11 >seq2220 Length=7499480 Score = 129 bits (142), Expect = 5e-25 Identities = 401/581 (69%), Gaps = 45/581 (8%) Strand=Plus/Plus Query 29865 GCTGAGTCTTCAGCGGTTCCACGTTATCCAGGTAGACGTGAGCGTCTCCCA-GGTTGTGG 29923 ||||| | ||||| || || | || || ||||| | || || ||||||| ||||||| Sbjct 3701823 GCTGAATTTTCAGTGGCTCGATGTGTTC-AGGTAAATATGTGCATCTCCCAAGGTTGTGT 3701881 Query 29924 ACAAACTCTCCCGG--TTCTAGCCCGGTGAC-GTGAGCCATCATGTACGTGAGGAGAGAG 29980 |||| || || | ||| ||||||||| ||| || |||| | | ||| | || | | Sbjct 3701882 -CAAAGTCAACCTGGCTTCAGGCCCGGTGAATGTGCGCAATCACGCATGTG-GCAGGGCG 3701939 Query 29981 TAGCTGGCG-ATGTT-AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA-GC 30037 ||||||||| ||||| ||| | || || |||| ||||| || || ||||||| | || Sbjct 3701940 TAGCTGGCGGATGTTTAAACGCCACACCTGGCCC-ATGTCTCC-GA--TCTGGTACACGC 3701995 Query 30038 TGACACGAGAGCTCTCC-GTCGCTCAC---GTAA--AACTGACACATGGCGTGGCACGGA 30091 || || ||||| | || ||| || | ||||| || | ||| ||||| ||| Sbjct 3701996 TGCG--GACAGCTCAGCTGTTCACCACATTGTGAGGAACTG-CAGAGGGCATGGCATGGA 3702052 Query 30092 GGAAGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGC--GCACACGATGATGCGCC 30146 || | ||||| |||| | |||| || ||||| || || |||||| | | Sbjct 3702053 GGCAT-GCCATCAGAGGAGGATTCTCTTCGGAATTCCAAGCCAGCGATGGATGATTCTTC 3702111 Query 30147 TGTCTTCTGG----GTTGTTCCT-GATGAGGTCCACGGCG-TTTTGCAGCTGATCCACCC 30200 |||| || || |||| || | ||| ||| | | |||||||| | || || | Sbjct 3702112 TGTCGTCAGGAAGCGTTGGTCTTTGATTGTGTCAATCACTCTTTTGCAGTTTGTC-ACTC 3702170 Query 30201 CCATCCCCGAGT-AGTCTGC--CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACT 30257 || || || | | |||| || ||| || |||| ||||| || ||||||||||| | Sbjct 3702171 CCTGTCCTGAATGAATCTGATTCCACAT-TCTCTGTATTCTGCCCCAAAATGCCTCCA-T 3702228 Query 30258 GGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAAGCCCCTCTTGTCC 30316 |||| || || || || |||| ||| || ||||| ||| | ||| ||| ||||| Sbjct 3702229 GGAAGCCATA-ACTGGACCCAAGTC-CCTTCTTCTCTGGCCGGAGAACCCCAGGCTGTCC 3702286 Query 30317 AAAAAGTCTCTGGAACCGTTGGC-GTCCCAGATCTTTACCCCCTTCTCAGAGAGCTCTTT 30375 |||||||||| ||| || || || |||||||| || || ||||| ||| |||||||| Sbjct 3702287 AAAAAGTCTCGGGATCCATTTGCAATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTT 3702346 Query 30376 GGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 | |||||||| || ||| |||||||||| |||||||| Sbjct 3702347 AGCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCA 3702387 >seq9111 Length=11462142 Score = 125 bits (138), Expect = 6e-24 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5684302 AGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 5684243 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || |||||||| || || |||||||| ||||| || || ||||| | || | Sbjct 5684242 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 5684183 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 5684182 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 5684139 >seq5463 Length=20712753 Score = 113 bits (124), Expect = 4e-20 Identities = 184/260 (71%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| |||| || || || | | Sbjct 3580557 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3580498 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 3580497 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 3580438 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| || | |||| | ||| | || | | | || || | | Sbjct 3580437 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCACTCC 3580379 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 || || |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 3580378 TGAG------CGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 3580326 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 3580325 ACAGCGACGATGCAGTTTAG 3580306 Score = 104 bits (114), Expect = 2e-17 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || | || |||||||| |||| || || || | | Sbjct 14442909 ATGAGCTCCTTGTGGAGGTTCCTTGGGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 14442850 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 14442849 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 14442790 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 || || ||| |||||||| || | |||| | ||| | || | | | || || || | Sbjct 14442789 GTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATTCC 14442731 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 110616 | ||| | |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 14442730 TGA-----GCA-GTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 14442678 Query 110617 GCGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 14442677 ACAGCGACGATGCAGTTTAG 14442658 >seq8779 Length=12928400 Score = 100 bits (110), Expect = 2e-16 Identities = 179/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || ||| |||| |||| || || | || | Sbjct 5237499 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGTTGAGAACTAAATTAATTGTATCCTT 5237440 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 5237439 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 5237380 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 110557 ||| || ||| |||||||| | | |||| | ||| | || | || || || | Sbjct 5237379 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAACACCTGAATTCATTCC 5237321 Query 110558 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 110617 | || || |||| ||||| || || || || ||||||||||||| | | || Sbjct 5237320 AGAG------CGGCGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 5237267 Query 110618 CGGCCACGATACCGTTCAG 110636 | || ||||| | ||| || Sbjct 5237266 CAGCGACGATGCAGTTTAG 5237248 >seq6570 Length=23051202 Score = 95.1 bits (104), Expect = 1e-14 Identities = 112/152 (74%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 110379 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 110438 ||||||||| || || || || || || |||||||| ||| || || || | | Sbjct 15031352 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15031293 Query 110439 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 110498 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15031292 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15031233 Query 110499 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 110530 ||| || ||| |||||||| || | ||||| Sbjct 15031232 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15031201 >seq5102 Length=86132 Score = 82.4 bits (90), Expect = 6e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 110392 GGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTC 110451 || || || || || || ||||||| |||| || || || || ||| || || || | Sbjct 59075 GGAGGTTCCTTGAGTTCTCTGCTGAAAACTAAATTAATTCTATCCTTCAAAGATCGATCC 59134 Query 110452 TTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCTCTG 110511 || || || ||||||||||| ||||| |||| ||| ||||||| ||||| || ||| Sbjct 59135 TTCTCAGGAATGGAGAACCAGGTCTTCCTACGCATAATCACCAGATTCTGTTTACCTTCT 59194 Query 110512 ACTGAAGA 110519 |||||||| Sbjct 59195 ACTGAAGA 59202 >seq3259 Length=27333823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 110401 TTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 110460 || || || |||||||| |||| || || || | | | ||||| |||||| || || Sbjct 16203140 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 16203081 Query 110461 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTGCCT 110508 ||||||||||||||||| ||||||| ||||||| ||||| || ||| Sbjct 16203080 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 16203033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406253784835836