Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq5683 138 1e-27 seq3835 114 1e-20 seq2078 105 6e-18 seq6237 91.5 1e-13 seq5018 91.5 1e-13 seq10991 89.7 4e-13 seq7399 87.8 2e-12 seq3160 87.8 2e-12 seq888 86.0 5e-12 >seq5683 Length=19003911 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || || | ||||| | || || ||||| || || || Sbjct 4210689 CATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCCAG 4210630 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||||| |||||| |||||||||||||| || || || ||||| || || Sbjct 4210629 TGACACCATTGAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCA 4210570 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | |||| ||||||||||| ||||||| | || | || || ||||| Sbjct 4210569 GCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTACAA 4210510 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || || ||||| ||| | || |||| ||||| |||| |||||||| Sbjct 4210509 CATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGCGAGGTGGCAT 4210459 >seq3835 Length=881625 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || ||||| ||||| || Sbjct 142146 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 142087 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || ||||| ||||||||||| || ||||| || Sbjct 142086 GACACCATCGAAAATGTGAAGGCCAAGATCCAAGATAAAGAAGGCATCCCCCCCGACCAG 142027 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || | || || |||||| Sbjct 142026 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTCTCTGACTACAAC 141967 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 || || |||||||||||| | || |||| |||| || |||||||| Sbjct 141966 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGGGGTGGC 141919 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || || |||||||| || Sbjct 142374 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAAGTGGAGCCCAGT 142315 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || || || || || ||||||||||| || ||||| || Sbjct 142314 GACACCATCGAAAATGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCCCCCGACCAG 142255 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 142254 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 142195 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || |||||||||||| | || |||| ||||| || | ||||| || Sbjct 142194 ATCCAGAAGGAGTCGACCCTGCACCTGGTCCTGCGTCTGAGAGGTGGTAT 142145 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||||||||||| | || || ||||| ||||| || Sbjct 142602 ATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCCAGT 142543 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | || || ||||| || || || |||||||| || ||||| || Sbjct 142542 GACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 142483 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | || | || ||||| || ||||||| | || |||| || |||||| Sbjct 142482 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTACAAC 142423 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||| | || |||| |||| || | ||||| || Sbjct 142422 ATCCAGAAAGAGTCGACCCTGCACCTGGTCCTGCGCCTGAGAGGTGGTAT 142373 >seq2078 Length=10708440 Score = 105 bits (116), Expect = 6e-18 Identities = 163/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||| | ||||| | || || || |||||| | || | ||||| || || || Sbjct 9965874 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 9965815 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | | ||||| ||||| ||||||||||||||||| || || ||||| || || Sbjct 9965814 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 9965755 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| || ||||| || |||| || | | || | || || |||||| Sbjct 9965754 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 9965695 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || ||||| |||| ||| | || ||||| ||| ||| |||||||| || Sbjct 9965694 ATCCAAAAACAGTCCACCGTGCACCTGGTTCTGCACCTGCAAGGTGGCATTAC 9965642 >seq6237 Length=16698259 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || |||||||| || | || Sbjct 3406080 ATGCAGATCTTTGTGAAGACACTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 3406021 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| |||||| |||||||||||||| || || || ||||| || || Sbjct 3406020 GACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 3405961 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | || ||||||||||| |||| || | || | || || ||| || Sbjct 3405960 CAGCATCTGCTACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGAC 3405901 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||||| || | || |||| |||| |||| |||||||| Sbjct 3405900 ATCTGGGAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGCGAGGTGGCAT 3405851 >seq5018 Length=1154 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || || |||||| | || |||||||| || | || Sbjct 544 ATGCAGATCTTTGTGAAGACACTTACGGGCAAGACCATCACTCTTGAGGTCAAGCCCAGT 603 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | |||| |||||| |||||||||||||| || || || ||||| || || Sbjct 604 GACACCAATGAGGATGTCAAAGCCAAAATTCAAGACAAGGAGGGTATCCCACCTGACCAG 663 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | || ||||||||||| |||| || | || | || || ||| || Sbjct 664 CAGCATCTGCTACTTGCCGGCAAACAGCTGGAGGATGGCCGAACTCTCTCAGACTACGAC 723 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||||| || | || |||| |||| |||| |||||||| Sbjct 724 ATCTGGGAAGAGTCCACTCTGCACCTGGTGCTGCGCCTGCGAGGTGGCAT 773 >seq10991 Length=13028613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 161/234 (69%), Gaps = 1/234 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || || | |||||| | || || || || | || || Sbjct 8492934 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTCGAGATCGAGCCCAGT 8492993 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGA-AGGCATACCACCCGATCA 27106 ||| | ||| ||| |||||| |||||||||||||| || || || ||||| || || Sbjct 8492994 GACACCATTTAGAATGTCAAAGCCAAAATTCAAGACAAGGAGGGGTATCCCACCTGACCA 8493053 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 |||||| | ||| || || ||||| |||| || | || | || | ||||| Sbjct 8493054 GCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGCTACAA 8493113 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 ||| || || ||||| ||| || | |||| || | |||| |||||||| || Sbjct 8493114 CATCCAGAAAGAGTCCACCCTAAACCTGGTGCTGTGCCTGCGAGGTGGCATTAC 8493167 >seq7399 Length=1863 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| ||||| || || || || |||||| | |||| || | || || Sbjct 872 ATGCAGACCTTTGTGAAGACCCTCACAGGCAAGAC-----CTCT-GAGATCGAGCCCAGT 819 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || ||||| ||||| || || Sbjct 818 GACACCACTGAGAATGTCAACGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGACCAG 759 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| || |||||||| |||| || | | || | || || |||||| Sbjct 758 CAGCATCTGATACTTGCGGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 699 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || || || ||||| || | || |||| |||| ||| |||||||| || Sbjct 698 ATCCAGAAAGAGTCCACTCTGCACATGGTGCTGCGCCTGCAAGGTGGCATTAC 646 >seq3160 Length=4152596 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||||| ||||| || || || || |||||| | |||| || | || || Sbjct 635201 ATGCAGACCTTTGTGAAGACCCTCACAGGCAAGAC-----CTCT-GAGATCGAGCCCAGT 635254 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | | ||||| ||||| |||||||||||||| || ||||| ||||| || || Sbjct 635255 GACACCACTGAGAATGTCAACGCCAAAATTCAAGACAAGGAGGGCATCCCACCTGACCAG 635314 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||| | | ||| || |||||||| |||| || | | || | || || |||||| Sbjct 635315 CAGCATCTGATACTTGCGGGCAAACAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 635374 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCATAAC 27220 || || || ||||| || | || |||| |||| ||| |||||||| || Sbjct 635375 ATCCAGAAAGAGTCCACTCTGCACATGGTGCTGCGCCTGCAAGGTGGCATTAC 635427 >seq888 Length=8072957 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || | ||||| || || || ||| | || || || |||| ||||| || Sbjct 5993573 ATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCACCCTCAAAGTTGAACCCTCG 5993514 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || |||| || | || || || || || || || ||||| || || || ||||| Sbjct 5993513 GATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 5993454 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || ||||| ||| ||||||| | || | || || ||||| Sbjct 5993453 CAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTACAAT 5993394 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 |||||||||||||| || | ||| | |||||| | | || ||||| Sbjct 5993393 ATTCAAAAGGAGTCTACTCTTCATCTTGTTTTGAGACTTCGTGGTGG 5993347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434856244724160