Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5683 134 9e-27 seq888 118 7e-22 seq4141 100 2e-16 seq1108 100 2e-16 seq10991 98.7 7e-16 seq9220 98.7 7e-16 seq2078 98.7 7e-16 seq4803 95.1 8e-15 seq2044 95.1 8e-15 seq4692 93.3 3e-14 seq3835 91.5 1e-13 >seq5683 Length=19003911 Score = 134 bits (148), Expect = 9e-27 Identities = 152/201 (76%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| || || || |||||| |||| ||||| ||||| || || || || || Sbjct 4210691 AACATGCAGATCTTTGTGAAGACCCTCCCGGGCAAAACCATCACCCTTGAGGTCGAGCCC 4210632 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | ||| | |||| || ||||| || ||| | || || || Sbjct 4210631 AGTGACACCATTGAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGTATCCCACCTGA 4210573 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | ||||||||||||||||| |||||||| | |||||| | || || Sbjct 4210572 CCAGCAGCGTCTGATATTTGCCGGCAAACAGCTGGAAGATGGCCGCACTCTCTCAGACTA 4210513 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || ||||||||||| Sbjct 4210512 CAACATCCAGAAAGAGTCCAC 4210492 >seq888 Length=8072957 Score = 118 bits (130), Expect = 7e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| ||||| || || ||||| ||| ||||||| || Sbjct 5993576 AAAATGCAGATTTTCCTGAAAACCCTTACGGGGAAGACCATCACCCTCAAAGTTGAACCC 5993517 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| || || || || ||||| | || || ||| Sbjct 5993516 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 5993457 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 5993456 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 5993397 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | ||||| || Sbjct 5993396 AATATTCAAAAGGAGTCTACTCTTCATCTTGTTTTGAG 5993359 >seq4141 Length=17607553 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| |||||||| ||||| || || ||||| ||||| ||||| || Sbjct 16722817 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGTTGAACCC 16722876 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| | | |||| |||| || || || || ||||| | || || | | Sbjct 16722877 TCGGATATGATAGAAAATGTAAAGGCCAAGATCCAGGAGAAGGAAGGAATTCCTCCTGCT 16722936 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | || | | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 16722937 CCGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 16722996 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || | ||||| ||||| || | ||| | || || || Sbjct 16722997 AATAGTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 16723034 >seq1108 Length=15764245 Score = 100 bits (110), Expect = 2e-16 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| | |||||| || || || || ||||| ||||| ||||| || Sbjct 5636479 AAAATGCAGATTTTCGTGATAACCCTTACAGGGAAGACCATCACCCTCGAGGTTGAACCC 5636420 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | ||| |||| || || | || ||||| | || || | | Sbjct 5636419 TCGGATACGATATAAAATGTAAAGGCCAAGATCCAGGTTAAGGAAGGAATTCCTCCTGGT 5636360 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 | ||| | || ||||| ||||| ||||||||||| | ||| ||||| || ||| Sbjct 5636359 CGGCAGAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 5636300 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||||||||| || | ||||| || || || Sbjct 5636299 AATATTCAAAAAGAGTCTACTCTTCATTTTGTGTTGAG 5636262 >seq10991 Length=13028613 Score = 98.7 bits (108), Expect = 7e-16 Identities = 146/202 (72%), Gaps = 9/202 (4%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||||| ||| || || ||||| ||||| | || ||| Sbjct 8492934 ATGCAGATCTTTGTGAAGACCCTCATGGGCAAGACCATCACCCTCGAGATCGAGCCCAGT 8492993 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGG-TGTACCGCCAGATC 23728 ||||| || | ||| | ||| | |||| || ||||| || || | | || || || | Sbjct 8492994 GACACCATTTAGAATGTCAAAGCCAAAA-TTCAAGACAAGGAGGGGTATCCCACCTGACC 8493052 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTT---AGGCGATT 23785 | |||||| | ||| |||| || ||||| ||||| || | |||||| | |||| | Sbjct 8493053 AGCAGCGTCTGATACTTGCTGGGAAACAGCTGGAGGATGGCCGCACTCTCTCAGGC---T 8493109 Query 23786 ACAACATACAAAAAGAGTCCAC 23807 ||||||| || ||||||||||| Sbjct 8493110 ACAACATCCAGAAAGAGTCCAC 8493131 >seq9220 Length=42800024 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| ||||| || || ||||| ||||| | ||| || Sbjct 9830195 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCC 9830136 Query 23668 ACGGACACTGT-TGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 |||| || | | |||| | || || | || || || ||||| | || || || Sbjct 9830135 TCGGATACGATATAAAATGTAAAGAC-CGAGATCCAGGATAAGGAAGGAATTCCTCCTGA 9830077 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| || | || ||||| ||||| ||||||||||| | ||| ||||| || || Sbjct 9830076 TCAGCAAAGACCGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 9830017 Query 23787 CAACATACAAAAAGAGTCCAC 23807 ||| || ||||| ||||| || Sbjct 9830016 CAATATTCAAAAGGAGTCTAC 9829996 >seq2078 Length=10708440 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| | || || | ||||||||||| || || |||| || || || || ||| Sbjct 9965874 ATGCAGCTCTTTGTGGAGACCCTCACGGGCAAGACCATCATCCTTGAGGTCGAGCCCAGT 9965815 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||| ||| | || ||| |||||| |||||||| ||| | || || || || Sbjct 9965814 TACACCACTGAGAATTTCAAAGCCAAAATTCAAGACAAAGAGGGTATCCCACCTGACCAG 9965755 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | |||||||| ||||| || ||||| || | ||||| | || |||||| Sbjct 9965754 CAGCGTCTGATATTTGCTGGCAAGCAGCTGGAGGATGGCTGCACTCTCTCAGACTACAAC 9965695 Query 23791 ATACAAAAAGAGTCCAC 23807 || |||||| ||||||| Sbjct 9965694 ATCCAAAAACAGTCCAC 9965678 >seq4803 Length=30560297 Score = 95.1 bits (104), Expect = 8e-15 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||||| ||||| || | ||| || || ||||| || || ||||| || Sbjct 28370001 AAAATGCAGATTTTCGTGAAAACTCTAAGGGGGAAGACTATCACCCTTGAGGTTGAACCC 28369942 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | || || | |||| |||| || || || || ||||| | || || ||| Sbjct 28369941 TCAGATACGGCAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 28369882 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | | || ||||| ||| | ||||||||||||| ||| ||||| || | | Sbjct 28369881 CAGCAAAGACTGATCTTTGCTGGCGAGCAACTGGAAGACGGACGTACTTTGTCTGACTGC 28369822 Query 23788 AACATACAAAAAGAG 23802 ||||| ||||| ||| Sbjct 28369821 AACATTCAAAAGGAG 28369807 >seq2044 Length=20526591 Score = 95.1 bits (104), Expect = 8e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| || |||||||| || || || ||||| || || ||||| ||| Sbjct 13287441 AATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTTGAGCCCAG 13287382 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || |||| | | || || ||||| | || || || | Sbjct 13287381 TGACACCATCGAGAATGTCAAGGCAAAGA-TCCAAGATAAGGAAGGCATTCCTCCCGACC 13287323 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || |||||||| || || |||||||| | ||||| | || |||| Sbjct 13287322 AGCAGAGGCTGATCTTTGCCGGAAAGCAGCTGGAAGATGGGCGCACCCTGTCTGACTACA 13287263 Query 23789 ACATACAAAAAGAGTCCAC 23807 |||| || ||||||||||| Sbjct 13287262 ACATCCAGAAAGAGTCCAC 13287244 >seq4692 Length=25524837 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/218 (70%), Gaps = 1/218 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||||||| | |||||||| ||||||| | | ||||| ||||| ||||| || Sbjct 22647815 AAAATGCAGATTTTCATGAAAACCCTTACGGGAAGACC-ATCACCCTCGATGTTGAACCC 22647757 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || | |||| |||| | || || || ||||| | || || | | Sbjct 22647756 TCGGATACGATAGAAAATGTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 22647697 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || || | || ||||| ||||| ||||||||||| | | | ||||| || ||| Sbjct 22647696 CAGCAAAGAGGGATCTTTGCTGGCAAGCAACTGGAAGATGCATGGACTTTGTCTGACTAC 22647637 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTTAAG 23825 || || ||||| ||||| || | ||| | || || || Sbjct 22647636 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTTGAG 22647599 >seq3835 Length=881625 Score = 91.5 bits (100), Expect = 1e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || ||||| || || || || || Sbjct 142605 AAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAGCCC 142546 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | |||| | || ||||| || || ||||| | || || || Sbjct 142545 AGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCCGAC 142486 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || ||||| ||||| || |||||||| | |||||| | || ||| Sbjct 142485 CAGCAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGACTAC 142426 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || |||||||| || Sbjct 142425 AACATCCAGAAAGAGTCGAC 142406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337962501847964