Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq9111 145 6e-30 seq5463 109 4e-19 seq2220 102 7e-17 seq8779 96.9 3e-15 seq6570 86.0 5e-12 seq3259 82.4 6e-11 >seq9111 Length=11462142 Score = 145 bits (160), Expect = 6e-30 Identities = 131/165 (79%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || ||| Sbjct 5684302 AGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 5684243 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC 29833 || || || |||||||| ||||| |||||||| |||||||| || ||||| | || | Sbjct 5684242 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 5684183 Query 29834 ACGTAAAACTGACACATGGCATGGCACGGAGGAAGGGCCATGAGA 29878 || || ||||| || | ||||||||| ||||| || ||||| ||| Sbjct 5684182 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAGA 5684138 >seq5463 Length=20712753 Score = 109 bits (120), Expect = 4e-19 Identities = 183/260 (70%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| |||| || | || | | Sbjct 3580557 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 3580498 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 3580497 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 3580438 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| || | |||| | ||| | || | | | || || Sbjct 3580437 CTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTC----- 3580384 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 | || | ||| |||| ||||| || ||||| || |||||||||||| ||||| || Sbjct 3580383 -ACTCCTGAGCGGCGGCCAGGGCAGGTCCCCGTTCTTGCCGATGCCCATGTTCTGG-GAC 3580326 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 3580325 ACAGCGACGATGCAGTTTAG 3580306 Score = 95.1 bits (104), Expect = 1e-14 Identities = 180/260 (69%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || | || |||||||| |||| || | || | | Sbjct 14442909 ATGAGCTCCTTGTGGAGGTTCCTTGGGTTCTCTGCTGAGAACTAAATTAATTCTACCCTT 14442850 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 14442849 TAAAGGTCAATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 14442790 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 || |||||| | ||||| || | |||| | ||| | || | | | || || || Sbjct 14442789 GTGTTTACCTTCTACTGAAGAGGTTGTGGTC-ATTCTCTGGAAATATCTGAATTCATT-- 14442733 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 114499 || | | | |||| ||||| || | ||| || |||||||||||| ||||| || Sbjct 14442732 ----CCTGAGCAGTGGCCAGGGCAGGTCCCTGTTCTTGCCGATGCCCATGTTCTGG-GAC 14442678 Query 114500 GCTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 14442677 ACAGCGACGATGCAGTTTAG 14442658 >seq2220 Length=7499480 Score = 102 bits (112), Expect = 7e-17 Identities = 131/174 (75%), Gaps = 5/174 (3%) Strand=Plus/Plus Query 30017 AAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTC-GAA 30075 ||||||||||| ||||| || || || || |||| ||| || ||||| ||| | ||| Sbjct 3702217 AAATGCCTCCA-TGGAAGCCATA-ACTGGACCCAAGTC-CCTTCTTCTCTGGCCGGAGAA 3702273 Query 30076 GCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGC-GTCCCAGATCTTTACCCCCTTCT 30134 ||| ||||||||||||||| ||| || || || |||||||| || || ||||| Sbjct 3702274 CCCCAGGCTGTCCAAAAAGTCTCGGGATCCATTTGCAATCCCAGATTTTCACTCCCTTGG 3702333 Query 30135 CGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30188 || |||||||| | |||||||| || ||| |||||||||| |||||||| Sbjct 3702334 AAGACAGCTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCA 3702387 >seq8779 Length=12928400 Score = 96.9 bits (106), Expect = 3e-15 Identities = 178/259 (69%), Gaps = 8/259 (3%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || ||| |||| |||| || | | || | Sbjct 5237499 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGTTGAGAACTAAATTAATTGTATCCTT 5237440 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | ||||| |||||| || || ||||||||||| ||||| |||||||| ||||||| || Sbjct 5237439 TAAAGGTCGATTCTTCTCAGGAATGGAGAACCAGGTCTTCCTACCCATAATCACCAGATT 5237380 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 114440 ||| |||||| | ||||| | | |||| | ||| | || | || || || | Sbjct 5237379 CTGTTTACCTTCTACTGAAGAAGGTGTGGTC-ATTCTCTGGAAACACCTGAATTCATTCC 5237321 Query 114441 AAAGTCTCACCGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACG 114500 | || ||| |||| ||||| || || || || ||||||||||||| | | || Sbjct 5237320 AGAG------CGGCGGCCAGGGCAGTTCCCCATTCTTGCCGATGCCCATGTTTTGGGACA 5237267 Query 114501 CTGCCACGATACCGTTCAG 114519 | || ||||| | ||| || Sbjct 5237266 CAGCGACGATGCAGTTTAG 5237248 >seq6570 Length=23051202 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 114262 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCT 114321 ||||||||| || || || || || || |||||||| ||| || | || | | Sbjct 15031352 ATGAGCTCCTTGTGGAGGTTCCTTGAGTTCTCTGCTGAGATCTAAATTAATTCTACCCTT 15031293 Query 114322 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 114381 | |||| |||||| || || ||||||||||||||||| ||||||| ||||||| || Sbjct 15031292 TAAAGGTTGATTCTTCTCAGGAATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATT 15031233 Query 114382 CTGCTTACCTCTGTCGGAAGACGTAGCGGTCA 114413 ||| |||||| | ||||| || | ||||| Sbjct 15031232 CTGTTTACCTTCTACTGAAGAGGTTGTGGTCA 15031201 >seq3259 Length=27333823 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 114284 TTAAGCTCCCTGCTGAGGACTACGTTTAGCCTGTCTCTCAGAGGTCTATTCTTTTCGGGG 114343 || || || |||||||| |||| || | || | | | ||||| |||||| || || Sbjct 16203140 TTGAGTTCTCTGCTGAGAACTAAATTAATTCTACCCTTTAAAGGTCGATTCTTCTCAGGA 16203081 Query 114344 ATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTTCTGCTTACCT 114391 ||||||||||||||||| ||||||| ||||||| ||||| |||||| Sbjct 16203080 ATGGAGAACCAAGTCTTCTTACCCATAATCACCAGATTCTGTTTACCT 16203033 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406106605346638