Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1989 241 1e-58 seq4087 176 4e-39 seq2274 129 5e-25 seq7011 127 2e-24 seq2631 109 5e-19 seq1330 107 2e-18 seq3315 100 2e-16 seq1678 91.5 1e-13 seq10880 89.7 4e-13 seq1911 89.7 4e-13 seq2165 84.2 2e-11 seq2598 82.4 7e-11 >seq1989 Length=5200062 Score = 241 bits (266), Expect = 1e-58 Identities = 516/761 (68%), Gaps = 19/761 (2%) Strand=Plus/Minus Query 4379 TCGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCT 4438 || ||| || ||| | || || || || |||| || ||| || || ||||| | | Sbjct 4401745 TCTGTCTGCCACAGACTCAATGTATTGCTTCATTAGAGTGCAATTCATCCCAATGAGCTT 4401686 Query 4439 CACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 |||||| | || | || | || || |||||||| || || | | ||| | | Sbjct 4401685 CACAGGCAAGGCCTCAGTGAGGAATTCCTGTTCTATCCGAACAGCATTGATAATTCTTCC 4401626 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAAACAATAAACACGCAAAATC 4558 | ||||| | || | |||||| | | | | || |||| | || |||||||| Sbjct 4401625 TCTTATTCTCTCCTCCAGTGGTTTGTGTGCCAGGTGATTGAACATCAGGCAAGCAAAATC 4401566 Query 4559 ACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAA 4618 ||| || ||||| || |||| ||||| ||||| || ||||| || | || ||||| | Sbjct 4401565 ACAGTGTAAACCCTCATCTCCACTAATAAGTTCATTGGAAAAGGTGAGGCCAGGCATCAG 4401506 Query 4619 ACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTAC 4678 |||| || || ||||| ||||| | ||||| | ||||||||| |||||||| | Sbjct 4401505 TCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGC 4401449 Query 4679 GGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTTAATCCATTTTA 4737 || ||||| |||| | || ||| | | |||| |||||||| |||||| | | Sbjct 4401448 TGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCT-GCTTTGTCCCCAATCCAGTGCA 4401390 Query 4738 ATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAAA---TAATT 4794 | ||||| | || ||||| || || || || || | || || || || |||| Sbjct 4401389 AGGCCCAATCTGCCGCCTTCTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATT 4401330 Query 4795 TACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAA 4853 ||| || |||| |||| || |||||||| || || | ||||||||| ||||| Sbjct 4401329 CCCTTACTT----TGGGATCTTTTATGTAAGTGTCAATAAGGAAACTATACATTCCAGAA 4401274 Query 4854 TGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACT 4913 ||||| ||||| || ||||| || || || | || || | |||||||| || |||||| Sbjct 4401273 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 4401214 Query 4914 TCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAAC 4973 || | | | ||| || || |||||| | |||||||| || ||||| ||| |||| || Sbjct 4401213 TCTTGGCTACATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGCTACAAAGAAA 4401154 Query 4974 GCCAAAACATGAGATATAAAGTACTGT-TCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAA 5032 ||| |||||| |||||||| | || | || || ||||| || || ||||| | ||| Sbjct 4401153 ACCAGAACATGGGATATAAAAT-CTCTCTCCTCGGGCTTCAGGGATTCCCAGT--GCCAA 4401097 Query 5033 A--TCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTAC 5090 | || || | | || || || || | ||||| || || |||||||| || || ||| Sbjct 4401096 ATGTCCTTGGACAGGTCCACCTCCTCCGCGGTCCAGAAGGAAGCTTCCGCCTTCTTATAC 4401037 Query 5091 ATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 || ||| |||||| | |||| | || | |||||||| Sbjct 4401036 ATCTGCCAGATATCATGGTACTCGGTGGGGAAGATGACAAA 4400996 >seq4087 Length=903614 Score = 176 bits (194), Expect = 4e-39 Identities = 235/324 (73%), Gaps = 2/324 (1%) Strand=Plus/Minus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 28067 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 28008 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTT 4928 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 28007 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGC 27948 Query 4929 TCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGAT 4988 || || |||||||| |||||||| || || || |||||||| || |||| |||||| || Sbjct 27947 TCCACCAAGTTTTCATTTACTATGCCATCGCTTGCTGCAAAGAAAGCCAGAACATGGAAT 27888 Query 4989 ATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCA 5048 ||||| || || || ||||| || || |||||| | | || || | | || Sbjct 27887 ATAAAATATCTCTCCTCGGGCTTCAGGGATTCCCAGTGCTGAATGTCCTTGGACAGGTCC 27828 Query 5049 ACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGA 5108 || || || | ||||| || || || ||||| || || ||||| ||| ||||| | Sbjct 27827 ACCTCCTCGGCGGTCCAGAAGGAAGCCTCCGCCTTCTTATACATCTGCCAGATATCGTGG 27768 Query 5109 TACT-GAATCGGAAGTATGACAAA 5131 |||| || ||||| |||||||| Sbjct 27767 TACTCGATGAGGAAG-ATGACAAA 27745 >seq2274 Length=11109 Score = 129 bits (142), Expect = 5e-25 Identities = 158/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 4812 TCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCA 4871 |||| ||| | ||||| || || || |||| || ||||||||||| |||||| ||||| Sbjct 4305 TCTTTAATGT--GTGTCAATAAGGAGACTATTTATGTCAGAATGTATGTTTTCTGTAGCA 4248 Query 4872 ATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCT 4931 || || || || || ||||| | |||||| | |||| ||| | | |||| ||| Sbjct 4247 ATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTGAACAAATTGTTCC 4188 Query 4932 ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATA 4991 || |||||||| | |||||| || |||| |||||||| || |||| || || |||||| Sbjct 4187 ACCAAGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAGAATATAGGATATA 4128 Query 4992 AAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTG 5026 || || ||| |||||||| || || |||||| Sbjct 4127 AAATATCTTTCCTCAGGCTTCAGGGCTTCCCAGTG 4093 >seq7011 Length=47169369 Score = 127 bits (140), Expect = 2e-24 Identities = 162/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 6213479 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 6213538 Query 31825 TCCTAGATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTC 31884 ||| | || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 6213539 TCCACGGTCAGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGA 6213598 Query 31885 AGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAG 31941 ||| ||||||||||| ||||| |||| ||||||||||||| |||||| | | || Sbjct 6213599 AGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTGAAG 6213657 Query 31942 TATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | ||||| || ||| | | || || || ||||||||| Sbjct 6213658 --TCAAAAACGGTGATCGAATTGCACAGCTCATTTGCGAA 6213695 >seq2631 Length=7319754 Score = 109 bits (120), Expect = 5e-19 Identities = 301/452 (67%), Gaps = 16/452 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| | ||| || ||||| || || |||||||| ||||| || ||||| || | Sbjct 2079009 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGGAAAATGTGAGG 2078950 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || ||||| | ||| || | ||||| ||||| ||||| || ||||||||||| Sbjct 2078949 CCAGGCATCAGTCCTTGTTTCCTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 2078890 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTTA 4727 ||| ||| || |||||| ||| | | || || | |||||| | Sbjct 2078889 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACATCTTTGTTCCCA 2078830 Query 4728 ATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTA 4787 ||||| || |||| || || ||||| || || || ||||| || || || Sbjct 2078829 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACA-GGCATTGTTCCAATGGCATTG 2078771 Query 4788 AATA---ATTTACTTTTTTCAAATGGG-TCTTGAATATAAGTGTCTATTAGTAGGCTATA 4843 || | ||| |||| || || |||| ||| | ||||| || || || |||| Sbjct 2078770 AAGAGAAATTCCCTTTCTT----TGTTATCTTTAATGT--GTGTCAATAAGGAGACTATT 2078717 Query 4844 CATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAG-CTTCTG 4902 || ||||||||||| |||||| ||||||| || || || ||||| || | ||||| Sbjct 2078716 TATGTCAGAATGTATGTTTTCTGTAGCAATTTGGAAGCCATAAAACCAGAAGGAGTTCTG 2078657 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTAT-ACCGTCACTG 4961 | | |||| || | | |||| | || || |||||||| | ||||| || |||| Sbjct 2078656 TAATCTGAATTTTCTGAACAAAT-TGTCCACCAAGTTTTCATCCACTATCCCCATCACAT 2078598 Query 4962 GCTGCAAAAAACGCCAAAACATGAGATATAAA 4993 ||||||||| |||| || || |||||||| Sbjct 2078597 CCTGCAAAAA--GCCAGAATATAGGATATAAA 2078568 >seq1330 Length=10395599 Score = 107 bits (118), Expect = 2e-18 Identities = 159/221 (72%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 31765 AGCGCTAGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGC 31824 ||| || || ||||| || ||||| || | | ||||| ||||| || ||| || |||| Sbjct 2357873 AGCTCTTGTGAAAACGGACATTCAGATAGCGCTCCCTTCTGGGTGTTATGGAAGAGTAGC 2357932 Query 31825 TCCTAGATCTGGATTGGCA-GTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATT 31883 ||| || || ||||| | ||||||||||| || || || || ||||| |||||| Sbjct 2357933 TCCACAGTCAGGCTTGGCTTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATG 2357992 Query 31884 CAGACTATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACA 31940 ||| ||||||||||| ||||| |||| ||||||| ||||| |||||| | | | Sbjct 2357993 AAGATTATAGAGGAAATGTTGGTGTTGTACTGTTTAACTTTGGCAAAGAAAAGT-TTGAA 2358051 Query 31941 GTATAAAAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAA 31981 | | |||||| | ||| | | || || || ||||| ||| Sbjct 2358052 G--TCAAAAAGTGTGATCGAATTGCACAGCTCATTTGTGAA 2358090 >seq3315 Length=2648449 Score = 100 bits (110), Expect = 2e-16 Identities = 115/154 (75%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCA--GGGTGCTACGGACGAATAGCTCCTAGAT 31832 ||||| || ||||| || || | ||||| ||||| || ||| || ||| ||| | | Sbjct 1403259 AAAACAGACATTCAGATAGCTCTTCCTTCTCTGGGTGTTATGGAAGAGTAGTTCCATGGT 1403318 Query 31833 CTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATA 31892 |||| ||||| | ||||||||||| || || || || ||||| |||||| | | || | Sbjct 1403319 CTGGCTTGGCTGCAAAACACTTTATTGATGTAGGAGCTGGTGTCATAGATGAAAATTACA 1403378 Query 31893 GAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||||| |||| |||| ||||||||||||| Sbjct 1403379 GAGGAAATATTGGTGTTGTACTGTTTAATTTTGG 1403412 >seq1678 Length=10304083 Score = 91.5 bits (100), Expect = 1e-13 Identities = 91/118 (77%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 4809 GGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATA 4868 || |||| || |||||||| || || || |||||||||||||||||||| ||||| || Sbjct 211302 GGATCTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATG 211361 Query 4869 GCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATC 4926 ||||| || || || || || || | |||||||| | |||||||| | | ||||| Sbjct 211362 GCAATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATC 211419 >seq10880 Length=11791330 Score = 89.7 bits (98), Expect = 4e-13 Identities = 98/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || || ||||| ||||| || || ||||||||||||||||| || || | Sbjct 10280194 AAAATCTT---ACCAAATTTTCATTTACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 10280250 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||||| || ||||||| || || | ||||| || |||||||| || | ||| || | Sbjct 10280251 TGTGAGAGATGAAGTACTTCTCATCTGCTTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 10280310 Query 5041 TTAAATCAAC 5050 ||| || || Sbjct 10280311 ATAAGTCGAC 10280320 Score = 86.0 bits (94), Expect = 5e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 || || || || ||||| || || |||||||| ||||| |||||||| ||||| |||||| Sbjct 10261393 TGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTTCC 10261452 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 10261453 ATAAAATCAAAAGGATT 10261469 >seq1911 Length=9838789 Score = 89.7 bits (98), Expect = 4e-13 Identities = 169/243 (70%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 31771 AGTTAAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCC-TA 31829 ||| |||| | ||||| || || | ||||| |||| || || || | ||||| || Sbjct 8218455 AGTGAAAATGGGCATTCATATAGCTCTTCCTTCTGGGTTTTATAGAAGAGTGGCTCCATA 8218514 Query 31830 GATCTGGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACT 31889 | ||||| ||||| | |||||||||||||| || || | ||||| ||||| ||| | Sbjct 8218515 G-TCTGGCTTGGCTGCAAAACACTTTATCGATGTAGGAACTGGTGTCATAGACGAAGATT 8218573 Query 31890 ATAGAGGAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAA 31946 | ||||||| ||||| ||| ||||||||||||| |||||| | || ||| | Sbjct 8218574 ACTGAGGAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGT-TTAAAGTCAGA 8218632 Query 31947 AAAAGGGCGATAGGGTAGCTCAACTAATTTGCGAAAAAATAGAAATGCCCCAAATAGAAG 32006 |||| | ||| | | || || || ||||| ||| ||| | || ||||||||| Sbjct 8218633 AAAA--GTGATCGCATTGCACAGCTCATTTGTGAATGAATTTTTAATCCAGAAATAGAAG 8218690 Query 32007 TAG 32009 || Sbjct 8218691 AAG 8218693 >seq2165 Length=5137665 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/180 (72%), Gaps = 7/180 (4%) Strand=Plus/Plus Query 31776 AAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCTG 31835 |||| || ||| | || || ||||| |||| | ||| || ||||||| | | ||| Sbjct 4835249 AAACAGACATTTAGATAGCTCCTCCTTCCAGGTGTTGTGGAAGAGTAGCTCC-ACA-CTG 4835306 Query 31836 GATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGAG 31895 | ||||| | ||||||||||| || || || | ||||| ||||| ||| || |||| Sbjct 4835307 GCTTGGCTGCAAAACACTTTATAGATGTAGGAGGTGGTGTCATAGAGGAAGATTACAGAG 4835366 Query 31896 GAAACGTTGGAATTGTGTTGTTTAATTTTGG---AGAAAAATCATACAGTATAAAAAAGG 31952 |||| ||||| ||| ||||||||||||| |||||| || | ||| |||||||| Sbjct 4835367 GAAATGTTGGTGCTGTACTGTTTAATTTTGGCAAAGAAAAGTC-TGAAGT-CAAAAAAGG 4835424 >seq2598 Length=2901663 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/152 (72%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 31775 AAAACCGATATTCAAATTTCTTTACCTTCAGGGTGCTACGGACGAATAGCTCCTAGATCT 31834 ||||| | ||||| || || | ||||| || || || ||| || | |||| | ||| Sbjct 2850462 AAAACGAACATTCAGATAGCTCTTCCTTCTGGATGTTATGGAGGAGTGGCTCT--GGTCT 2850405 Query 31835 GGATTGGCAGTTAAACACTTTATCGACGTGGGTGCGGGTGTTATAGATTCAGACTATAGA 31894 || |||| | ||||||||||| || | || || ||||| |||||| ||| |||| | Sbjct 2850404 GGCCTGGCTGCAAAACACTTTATAGATATAGGAGCTGGTGTCATAGATGAAGAGTATACA 2850345 Query 31895 GGAAACGTTGGAATTGTGTTGTTTAATTTTGG 31926 ||||| ||||| ||| || |||||||||| Sbjct 2850344 GGAAATGTTGGCGCTGTCCTGCTTAATTTTGG 2850313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426990095042189