Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq2220 127 2e-24 seq9111 116 3e-21 >seq2220 Length=7499480 Score = 127 bits (140), Expect = 2e-24 Identities = 395/578 (68%), Gaps = 39/578 (7%) Strand=Plus/Plus Query 27131 GCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGA 27190 ||||| | ||||| || || | ||| || ||||| | || || ||||||| ||| | Sbjct 3701823 GCTGAATTTTCAGTGGCTCGATGTGTTC-AGGTAAATATGTGCATCTCCCAAGGTTGTGT 3701881 Query 27191 CAAACTCTCCCGG--TTCTAGCCCGGTGAC-GTGAGCCATCATGTACGTGAGGAGAGAGT 27247 |||| || || | ||| ||||||||| ||| || |||| | | ||| | || | || Sbjct 3701882 CAAAGTCAACCTGGCTTCAGGCCCGGTGAATGTGCGCAATCACGCATGTG-GCAGGGCGT 3701940 Query 27248 AGCTGGCG-ATGTT-AAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGA---- 27301 |||||||| ||||| ||| | || || |||| ||||| || || ||||||| | Sbjct 3701941 AGCTGGCGGATGTTTAAACGCCACACCTGGCCC-ATGTCTCC-GA--TCTGGTACACGCT 3701996 Query 27302 GCTGACACGAGAGCTCTCCATCGC-TTACGTAAAACTGACATATGGCGTGGCACGGAGGA 27360 || |||| |||| | || | | || | ||||| || | ||| ||||| ||||| Sbjct 3701997 GCGGACAGCTCAGCTGTTCACCACATTGTGAGGAACTG-CAGAGGGCATGGCATGGAGGC 3702055 Query 27361 AGAGCCAT--GAGGCCCAAG-TCTTTGGGGTTCCAGGC--GCACACGATGATGCGCCTGT 27415 | ||||| |||| | |||| || ||||| || || |||||| | |||| Sbjct 3702056 AT-GCCATCAGAGGAGGATTCTCTTCGGAATTCCAAGCCAGCGATGGATGATTCTTCTGT 3702114 Query 27416 CTTCTGG----GTTGTTCCT-GATGAGGTCCACGGCG-TTTTGCAGCTGATCCACCCCCA 27469 | || || |||| || | ||| ||| | | |||||||| | || || ||| Sbjct 3702115 CGTCAGGAAGCGTTGGTCTTTGATTGTGTCAATCACTCTTTTGCAGTTTGTC-ACTCCCT 3702173 Query 27470 TCCCCGAGT-AGTCTAC--CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGA 27526 || || | | ||| || ||| || |||| ||||| || ||||||||||| |||| Sbjct 3702174 GTCCTGAATGAATCTGATTCCACAT-TCTCTGTATTCTGCCCCAAAATGCCTCCA-TGGA 3702231 Query 27527 ACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAA 27585 | || || || || |||| ||| || ||||| ||| | ||| ||| |||||||| Sbjct 3702232 AGCCATA-ACTGGACCCAAGTC-CCTTCTTCTCTGGCCGGAGAACCCCAGGCTGTCCAAA 3702289 Query 27586 AAGTCTCTGGAACCGTTGGC-GTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 27644 ||||||| ||| || || || |||||||| || || ||||| || |||||||| | Sbjct 3702290 AAGTCTCGGGATCCATTTGCAATCCCAGATTTTCACTCCCTTGGAAGACAGCTCTTTAGC 3702349 Query 27645 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 27682 |||||||| || ||| |||||||||| |||||||| Sbjct 3702350 ATTTGTGGATCCCTTGATAAACCACAGCAACTCCTCCA 3702387 >seq9111 Length=11462142 Score = 116 bits (128), Expect = 3e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| ||||| || | ||||||||||||||| || || Sbjct 5684302 AGGCCCGTGATGTGCGCAATCATGTATGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 5684243 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 || || || |||||||| || || |||||||| ||||| || || ||||| | | Sbjct 5684242 ACACCTAGGCCCATGTCTCCTGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 5684183 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAG 27371 || || ||||| || | ||| ||||| ||||| || ||||| || Sbjct 5684182 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCATCAG 5684139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369455712982223