Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq998 188 1e-42 seq225 120 4e-22 >seq998 Length=12558390 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||||| ||||| |||| |||||||||||| || ||||| || || |||||||| Sbjct 2147379 GTCTGGAACAACTGCTCATCACCCCATTCTGGATGCTCCTGTTTAAGCACGTCGCACACT 2147320 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 ||||||||||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 2147319 CTGTTGTGTTCCCGCAGCCAGATTGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 2147260 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || ||||| | |||| | || || |||| ||||| |||||||| | Sbjct 2147259 ACCTCCTGCCCCACAGCAAACCGCAGATGCTCAGGGACTTGAGGAGGGTAGATCATCTCT 2147200 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484 |||| |||||||| | ||| |||||||| || || ||||| |||| Sbjct 2147199 GCCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAATTATCT 2147151 Score = 178 bits (196), Expect = 2e-39 Identities = 233/323 (72%), Gaps = 0/323 (0%) Strand=Plus/Minus Query 8264 TTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTA 8323 |||| |||||| ||| ||||| | ||| | | || ||||| ||||| ||||| | Sbjct 2149452 TTGATGAGCTCTGGATCTGGAACACTGAATGAAGTAAAGGGACAGCCCTTCACGTTATTG 2149393 Query 8324 CAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAG 8383 |||| ||||||||||| | || | |||| ||| || ||||| ||||| || || Sbjct 2149392 CAGATGAGAGACTGAATTGAGGCAGTGTTGATGATTTGAAAACCCACTTCTCCACCAAAA 2149333 Query 8384 GTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAG 8443 ||||| ||||||||||| | || || || || || || |||| || ||||| | |||| Sbjct 2149332 GTGCTTGGCTTCCAGTAGGCAGGAGAACATATAACATTACCCATAAGTCCTTTCAAGGAG 2149273 Query 8444 AACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCC 8503 ||||| || || | || | ||| ||||||| |||||||| | ||||| |||||||| Sbjct 2149272 AACGGTGCTCCAACTTCTACCATGGTCTCACCAAAGATGGCATCTGGACGAGGCTTTTCT 2149213 Query 8504 ACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCG 8563 |||| | | | |||||||||||||| |||| ||| || || || || | || Sbjct 2149212 ACCAGAAGGGCAGGATACAGCTCCACAGCATCGATGTCACCATAGAGTGCTTCCAACTCT 2149153 Query 8564 GCAGCGATCTCCTTTTCTCCTGT 8586 |||| || |||||||||||||| Sbjct 2149152 GCAGACATTTCCTTTTCTCCTGT 2149130 Score = 136 bits (150), Expect = 6e-27 Identities = 125/158 (79%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | || Sbjct 2146224 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGCCCTCGCTTATGATCTGTCTTGAA 2146165 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| |||||||| || ||| |||| || |||||||| | ||| |||||||||||||| Sbjct 2146164 AAACTGATGCGTGAAGTGCTGGGCAAAGAATGCAAACATCATGTTTGTGCCCTGGGGATC 2146105 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAA 9806 || |||| | || | |||||| ||||||||||| Sbjct 2146104 AGGGATGAACTTTCTTCTTAGAAGAAATTTTTCCACAA 2146067 Score = 98.7 bits (108), Expect = 1e-15 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 9906 AGTCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTG 9965 |||||||||| || || | ||||| || || || | ||| || ||||| || || | Sbjct 2145615 AGTCACCTTTCACACCCAAGGGAGTCGGGCAGTCATCAGGCACAGGAGGAAGGGCTCTGG 2145556 Query 9966 CGTAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATA 10025 ||||||||||| || ||||| |||||||||||| ||| | ||||| | ||||| Sbjct 2145555 TATAATAGGAGAGGTTAGAGAAGGCTTCCCAGCTTTTGTAGCCATAGTCAACATTGTAAG 2145496 Query 10026 TGGGAGGGCTGTCAATCAAATCGGATCTACCTGA 10059 | || || ||||||||||||| ||||| |||| Sbjct 2145495 TTGGTGGACTGTCAATCAAATGTGATCTGGCTGA 2145462 Score = 91.5 bits (100), Expect = 2e-13 Identities = 139/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Minus Query 8944 CTTACTCGGCCGGCTATTTGTTTCGTGAACGATTCTACTAGCTGGGTAATGCCGTGAGTC 9003 ||||| | ||| || ||||| | ||||| ||||| || | ||||||||| || || | Sbjct 2147972 CTTACCCTGCCAGCAATTTGCCTGGTGAATGATTCAACAAACTGGGTAATTCCATGTTCC 2147913 Query 9004 ATGAGTATGGAATTGTTGTAGACGAA--GTTAACGTAGTCATACTTTGTTTTATCAATCT 9061 | | ||| || |||||||||| || ||| | |||| || || | || ||| | Sbjct 2147912 AGTAATATAGAGTTGTTGTAGATAAACTGTTGA--TAGTTGTATTTCTGGTCATGAATTT 2147855 Query 9062 CAAATGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATAC 9121 ||| || |||| || | |||||||||||| | |||||||||| | | |||| Sbjct 2147854 GAAAGTTGTCAGGCAGAAGGGGATGCCAGTGATAGAGGGTGTTAAACTCAGCAGCAATAC 2147795 Query 9122 GATTTTGGTACTGGAA 9137 |||||||||||||||| Sbjct 2147794 GATTTTGGTACTGGAA 2147779 >seq225 Length=11895683 Score = 120 bits (132), Expect = 4e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 8349 TCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGG 8408 |||||||||| || |||| || || || || ||||| |||||||||||| |||| | Sbjct 918806 TCTTGACGATGTTAAAGCCCATCTCGCCACCAAAAGTGCTCGGCTTCCAGTACTCCGGAG 918865 Query 8409 AGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGC 8468 | |||||| ||| | | ||| || |||||||| || |||||||| | ||| | || | Sbjct 918866 AACAGATGGGATTCCCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATAC 918925 Query 8469 TCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCA 8528 |||| || ||||| | ||| ||| || |||||| | | | || | ||| | ||||| Sbjct 918926 TCTCCCCAAAGATAGAGTTTGGATGGCACTTTTCAAGAAGCAGCCCAGGGTAGAACTCCA 918985 Query 8529 CAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCT 8584 || || | |||||| || || || | || || || |||||||| |||||| Sbjct 918986 ACGCGTCAATGTCTCCATACAGCTCCTCCAACTCCGCTGCCATCTCCTTCTCTCCT 919041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716774349344320