Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Cercocebus_20atys_20[refseq_20GCF_5F000955945.1_202015-03-19] 11,433 sequences; 2,848,246,356 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5683 141 9e-29 seq3835 116 3e-21 seq2078 82.4 7e-11 >seq5683 Length=19003911 Score = 141 bits (156), Expect = 9e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || || || |||||||| ||||| ||| ||| ||||| ||||| ||||| || Sbjct 4210461 GCCACCTCGCAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGA 4210520 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 ||| ||||| | || || ||||| |||||||| |||||||| ||||| ||||| | || Sbjct 4210521 GAGAGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGG 4210580 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAG-TGTCGCTCGACTCCA 41813 | | ||||||||| ||| |||| |||| || || | |||| || | ||| | Sbjct 4210581 GATACCCTCCTTGTCT-TGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGA 4210639 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| | || || ||||| |||| || ||||| || || ||||||||||| Sbjct 4210640 CCTCAAGGGTGATGGTTTTGCCCGGGAGGGTCTTCACAAAGATCTGCATGTT 4210691 >seq3835 Length=881625 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||| ||||| ||||| ||||| || || ||||| | || || Sbjct 142394 ACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 142453 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||||| || ||||| ||| | Sbjct 142454 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 142513 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 ||||| ||||| | ||||| || | ||||||||| | || || || || Sbjct 142514 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 142573 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 || ||||| ||||| ||||| |||||||| || Sbjct 142574 CCGGTCAGGGTCTTCACGAAGATCTGCATTTT 142605 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41645 AGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGC 41704 ||||| | ||||| ||||| || ||||||||| ||||| ||||| || || ||||| Sbjct 142157 AGACGCAGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGG 142216 Query 41705 TCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCC 41764 | || || ||||||||||| || || || || | ||| ||||| | ||| | || || Sbjct 142217 CCATCTTCCAGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCT 142276 Query 41765 TTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTT 41824 || ||| ||| || ||||| | ||||| || | |||||| |||| || Sbjct 142277 TTATCCTGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACTTCCAGGGTG 142336 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || ||||| ||||| ||||| |||||||| Sbjct 142337 ATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 142374 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||| ||||| ||||| | || || Sbjct 141938 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGAGTGCGGCCATCTTCC 141997 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || || || || | ||| ||||| | ||| | || || || || | Sbjct 141998 AGCTGCTTGCCTGCAAAGATGAGCCTCTGCTGGTCGGGGGGGATGCCTTCTTTATCTTGG 142057 Query 41774 ATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTA 41833 || || ||||| | ||||| || | ||||||||| | || || || || Sbjct 142058 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 142117 Query 41834 CCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| ||||| |||||||| Sbjct 142118 CCGGTCAGGGTCTTCACGAAGATCTGCAT 142146 >seq2078 Length=10708440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| |||| ||| || || || ||||| ||||| ||||| |||| | || || Sbjct 9965666 ACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTCC 9965725 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| || |||||||| ||||| ||||| | || | | ||| |||| | || Sbjct 9965726 AGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTTGT-CTTG 9965784 Query 41774 ATTTTTTGCTTCAACGACGACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGTT 41830 | |||| |||| | | | || |||| || | ||| ||||| | | || || Sbjct 9965785 AATTTTGGCTTTGA--AATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTC 9965842 Query 41831 TTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || |||| || || | |||||| Sbjct 9965843 TTGCCCGTGAGGGTCTCCACAAAGAGCTGCAT 9965874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462237930979600