Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq423 203 3e-47 seq240 102 8e-17 >seq423 Length=130038232 Score = 203 bits (224), Expect = 3e-47 Identities = 418/617 (68%), Gaps = 10/617 (2%) Strand=Plus/Plus Query 16925 TCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAAT 16984 ||||| | ||| | ||| || || || |||||||| || || ||||| || ||||| Sbjct 41478044 TCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAA 41478103 Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 ||||| ||||||||||||||||| || |||||||| | || |||||| |||||||||| Sbjct 41478104 CCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTC 41478163 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| ||||||| || || | ||||||||| || || || | | ||||| Sbjct 41478164 TTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAG 41478220 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCG 17164 | | | ||||| | || || || ||||| | |||||| | | |||| || Sbjct 41478221 ACTACAACACGTTCCCCATAGGTAGCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCT 41478280 Query 17165 GCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAA--TAATTTCTCTTTTTCCT 17222 || || | || | ||| ||||||||| ||||| || || || ||| |||| || Sbjct 41478281 GCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGAAATTCCCTTT---CT 41478337 Query 17223 GTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCC 17281 | || || |||| || || || | || | || |||||| | || |||||||| ||| Sbjct 41478338 TTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAATGTATGTTTTCC 41478397 Query 17282 ATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAAT 17341 ||||| || || || || | || || |||||||| | | |||||||| | ||| Sbjct 41478398 ATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTAAAT 41478457 Query 17342 CGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGC 17401 || ||| | | ||| | || || ||||| || || || || || || ||| | ||| Sbjct 41478458 CGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAAAACCAGAACATGG 41478516 Query 17402 TTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATA 17461 || |||| | | || || || | || ||||| | | || ||||| | Sbjct 41478517 GATATAAAATCTCTCTCCTCGGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGG 41478576 Query 17462 TCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCA 17521 ||||| || |||| |||||| || ||| | ||||| ||| |||| | ||| |||||| Sbjct 41478577 TCCACCTCCTCGGAGGTCCAGAAGGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCA 41478636 Query 17522 TTGTATTGTATGGGGAA 17538 | ||| | ||||||| Sbjct 41478637 TGGTACTCGTTGGGGAA 41478653 Score = 129 bits (142), Expect = 6e-25 Identities = 372/568 (65%), Gaps = 11/568 (2%) Strand=Plus/Minus Query 16959 TCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATG 17018 |||| || || || | || ||||| ||||| || ||||| |||||||| || |||||| Sbjct 119131894 TCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATG 119131835 Query 17019 TCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAA 17078 | | || |||||| |||| ||||||| | ||| |||||| || || || ||||||| Sbjct 119131834 TGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAA 119131775 Query 17079 AGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT 17138 |||| | | || || ||||| || | ||||| | | || ||||||||| Sbjct 119131774 AGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGT 119131715 Query 17139 TACGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGG 17198 | | |||||| | ||||| | || || | ||| | | | ||| ||||| |||| Sbjct 119131714 TCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGG 119131656 Query 17199 CCTT--AAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCT 17256 | || | | || ||| |||| | | | | || || || || || || || || Sbjct 119131655 CATTGAAGAGAAATTCCCTTTCT----TTGTTATCTTTAATGTGTGTCAATAAGGAGACT 119131600 Query 17257 GTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 | || || || |||||||| || || || || || || || || ||||| || ||| Sbjct 119131599 ATTTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTC 119131540 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | || |||| ||| ||| ||||| | || ||||| | || || || || | Sbjct 119131539 TGTAATCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACA 119131480 Query 17377 CGCGGCGAAAAACGCC--AATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACG 17434 || || || || ||| |||||| | | || |||||| |||| || || | || | Sbjct 119131479 TGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAGGCTTCAGGGCT 119131422 Query 17435 CGCCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACT 17494 ||||| | | || ||||| | | | | || | || |||| ||| | || || Sbjct 119131421 TCCCAGTGCCAAATGTCCTTGGACAGGTTCGCCTCCTGGGCCATCCAGAAAGAAACCTCT 119131362 Query 17495 GCCTTTTTATACATATTCCAAATATCAT 17522 | || |||||| | ||||||||||||| Sbjct 119131361 ACTTTCTTATACGTCTTCCAAATATCAT 119131334 >seq240 Length=107702431 Score = 102 bits (112), Expect = 8e-17 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 16986 CCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCT 17045 |||| ||||||||||||||||| || |||||||| | || |||||| ||||||||||| Sbjct 97514985 CCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCT 97515044 Query 17046 TTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACG 17105 | | ||| ||||||| || || || || |||||||| || || || || | ||||| | Sbjct 97515045 TGAGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGG 97515104 Query 17106 C 17106 | Sbjct 97515105 C 97515105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517532635482720