Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq423 206 3e-48 seq113 107 2e-18 seq240 102 8e-17 >seq423 Length=130038232 Score = 206 bits (228), Expect = 3e-48 Identities = 411/603 (68%), Gaps = 12/603 (2%) Strand=Plus/Plus Query 16184 AGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGT 16243 ||||| || ||||| || || || || || || |||| || || ||||||||||||||| Sbjct 41478065 AGGTGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGT 41478124 Query 16244 TCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA 16303 || |||||||| || | || ||||| |||||||||||| | ||||||||||| ||| Sbjct 41478125 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCA 41478184 Query 16304 AATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTAC 16363 || | || |||||| || || || | | ||||| | | | |||||| | || Sbjct 41478185 AAATAACCAGAAAAG---ATGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAG 41478241 Query 16364 GTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCC 16423 ||||| ||| | | |||||| | | |||| || || || | ||| | |||| | Sbjct 41478242 GTAGCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGC 41478301 Query 16424 ATCGTTTCTATGGCCTTAAA--CAATTTCTCTTTTTCCTGAATATCGATTATATACGTAT 16481 |||||||| ||||| || || || ||| | |||| | ||| |||| || || | Sbjct 41478302 ATCGTTTCAATGGCATTGAAGCGAAATTCCC--TTTCTTTGGGATCTTTTATGTAAGTGT 41478359 Query 16482 CAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGA 16541 || | || ||||| |||||| | || |||||||| || ||||| || || || ||| ||| Sbjct 41478360 CAGTAAGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGA 41478419 Query 16542 AGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCA 16601 | || || || || | | || ||||| | |||||| ||| ||| ||| |||| | Sbjct 41478420 AACAGCGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTA 41478479 Query 16602 CGATACCGTCACTTGCAGCAA--AAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 | || || |||||||| |||| ||||| || ||| | | || |||| | | || || Sbjct 41478480 CTATGCCATCACTTGC-GCAAAGAAAACCAGAACATGGGAT--ATAAAATCTCTCTCCTC 41478536 Query 16660 AGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTTCTTCTGGCGTCCA 16719 | | || | ||| | | || ||||| | ||||| || || | ||||| Sbjct 41478537 GGGCTTCAGGGATTCCCAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCA 41478596 Query 16720 AAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATTGTATGGGAAATAC 16779 ||| ||| | ||||| ||| |||| | ||| ||||||| ||| | |||| || | Sbjct 41478597 GAAGGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGAT 41478656 Query 16780 GAC 16782 ||| Sbjct 41478657 GAC 41478659 Score = 136 bits (150), Expect = 4e-27 Identities = 319/472 (68%), Gaps = 12/472 (3%) Strand=Plus/Minus Query 16195 CATT-AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAA 16253 |||| || || || |||| || |||| || || || ||||| |||||||| ||| ||| Sbjct 119131897 CATTCAGGCAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAA 119131838 Query 16254 AAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCAAATGACCCCG 16313 | || | || ||||| |||| ||||||| | |||||||||| ||||| || || | Sbjct 119131837 ATGTGAGGCCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAG 119131778 Query 16314 AAAAGAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGCATCTT 16373 ||||||| | | || || ||||| || | ||||| | | ||| | |||| Sbjct 119131777 AAAAGAAGGTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTT 119131718 Query 16374 TATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTA 16433 | || | |||||| | ||||| | || || | || | ||| | || ||||| | Sbjct 119131717 TGTTCCCAATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAGGC-ATTGTTTCAA 119131659 Query 16434 TGGCCTTAAACA--ATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAA 16491 |||| || || | | ||| |||| | || |||| | || | || ||||| || | Sbjct 119131658 TGGCATTGAAGAGAAATTCCCTTTCTT-TGT-TATCTTTAATGT--GTGTCAATAAGGAG 119131603 Query 16492 ACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGC 16551 ||| | || || || |||||||| ||||| || || || || ||||||||||| | Sbjct 119131602 ACTATTTATGTCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGT 119131543 Query 16552 CTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTC 16611 || | || || | ||| |||| ||||| ||||||| |||| || || || || Sbjct 119131542 TTCTGTAATCTGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATC 119131483 Query 16612 ACTTGCAGCAAAAAACGCC--AATATGTGCTTAATGAAATATTTTTCGTCAG 16661 || ||| ||||| || ||| ||||| | | || |||||| |||| |||| Sbjct 119131482 ACATGCTGCAAAGAAAGCCAGAATATAGGAT--ATAAAATATCTTTCCTCAG 119131433 >seq113 Length=139301422 Score = 107 bits (118), Expect = 2e-18 Identities = 104/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16224 CTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCT 16283 |||| ||||||||||| ||||| ||||||||||| | |||||||| |||| |||| Sbjct 97069729 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCT 97069788 Query 16284 TTAACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAG 16343 ||| ||||||||| |||||||| || || || ||||| || || || |||| ||||| | Sbjct 97069789 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGG 97069848 Query 16344 CGATTAATCGTTCC 16357 | | | || |||| Sbjct 97069849 CCACCACTCTTTCC 97069862 >seq240 Length=107702431 Score = 102 bits (112), Expect = 8e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 16226 TCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTT 16285 || ||||||||||||||||| |||||||| || | || ||||| |||||||||||| Sbjct 97514987 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 97515046 Query 16286 AACCAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGC 16344 | ||||||||||| ||||| || || |||||||| || || || || | ||||| || Sbjct 97515047 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGC 97515105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511401589069280