Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq423 271 9e-68 seq113 116 4e-21 seq1 114 2e-20 seq240 100 3e-16 seq127 96.9 4e-15 >seq423 Length=130038232 Score = 271 bits (300), Expect = 9e-68 Identities = 425/603 (70%), Gaps = 15/603 (2%) Strand=Plus/Plus Query 24120 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 24179 || || ||||||| || || ||||| ||||||| |||||| ||||| || || | ||| Sbjct 41478068 TGATTGAACATCAGGCAAGCAAAATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCA 41478127 Query 24180 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 24239 |||||||| ||||| || ||||| || || || || || ||||| ||||| || ||||| Sbjct 41478128 TTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAA 41478187 Query 24240 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATA---A 24296 | |||||||||| | ||||| |||| |||||| | | || | ||| ||||| | Sbjct 41478188 TAACCAGAAAAGA---TGCCTTCCGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTA 41478244 Query 24297 CCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 24356 | | |||| ||||| | |||||||| ||||||||||| ||||||||||| Sbjct 41478245 GCTGATTTGTCCCCAATCCAGTGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATC 41478304 Query 24357 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 24416 || || || ||||| ||| || | | |||| || |||||| | || || ||| | Sbjct 41478305 GTTTCAATGGCATTGAAGCGAAATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTA 41478364 Query 24417 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACAT 24476 | | |||||||||| | ||||| |||||||| ||||| ||||| || || ||||||| Sbjct 41478365 AGGAAACTATACATTCCAGAATGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAG 41478424 Query 24477 CTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATT 24536 | || || || | ||| |||||| | |||||| || | || ||| |||| ||||| Sbjct 41478425 CGGGCTTCTGTCACCTGAACTTCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATG 41478484 Query 24537 CCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT 24596 || ||||| || ||||| || ||| ||||| |||||||| | | || || || | Sbjct 41478485 CCATCACTTGC-GCAAAGAAAACCAGAACATGGGATATAAAATCTCTCTCCTCGGGCTTC 41478543 Query 24597 AGTTTATTCCAATCATTG----ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 24652 || ||||| || || || || || || | ||||| || || ||||| || Sbjct 41478544 AG-GGATTCC---CAGTGCCAAATGTCCTTGGACAGGTCCACCTCCTCGGAGGTCCAGAA 41478599 Query 24653 TGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAAC 24712 || || || ||||| ||| |||| | |||||| ||||| || | | || || || || Sbjct 41478600 GGAAGCTTCCGCCTTCTTACACATCTGCCAGATATCATGGTACTCGTTGGGGAAGATGAC 41478659 Query 24713 AAA 24715 ||| Sbjct 41478660 AAA 41478662 Score = 206 bits (228), Expect = 3e-48 Identities = 319/450 (71%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 24147 CAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGG 24206 ||||||| |||||| || || ||||| | ||| ||| |||| ||||| || ||||| || Sbjct 119131877 CAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGGCCAGGCATCAGT 119131818 Query 24207 CCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACT 24266 || | || || ||||| ||||| ||||| || ||||||||||| | | ||| ||| Sbjct 119131817 CCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAGGTGCTTTCCACT 119131758 Query 24267 GCCGCAAAGGCAATAAGTCTTTCTCCAT---AACCGGCGCTGTCATGTATCC-ACTTTTG 24322 |||||||| || | |||||||| | || | ||| |||| || | Sbjct 119131757 AGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCAATCCAACACAAG 119131698 Query 24323 AGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtt 24382 | ||||| | |||||||| || |||| ||||||||| || || ||||| |||||| | | Sbjct 119131697 A-CCCAAACTGCCTTCTTCTTGACAC-AGGCATTGTTTCAATGGCATTGAAGAGAAATTC 119131640 Query 24383 tttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAAT 24442 |||| || |||||||| || ||| ||||| | ||||||| || || ||||| || Sbjct 119131639 CCTTTCTTTGTTATCTTTA--ATGTGTGTCAATAAGGAGACTATTTATGTCAGAATGTAT 119131582 Query 24443 GTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTAT 24502 |||||| || || ||||| || || ||||| || | || |||||||| | |||| Sbjct 119131581 GTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATCTGAATTTCTTG 119131522 Query 24503 ACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAA 24562 | |||| |||| | | ||||||| ||||| || |||| |||||||| || |||| Sbjct 119131521 AACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCAAAGAAAGCCAG 119131462 Query 24563 TACATGTTTTATAAAATATTTTTCGTCTGG 24592 | || |||||||||| |||| || || Sbjct 119131461 AATATAGGATATAAAATATCTTTCCTCAGG 119131432 >seq113 Length=139301422 Score = 116 bits (128), Expect = 4e-21 Identities = 106/134 (79%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || ||||| || || | ||| |||||||| |||||||| ||||| || || | ||| || Sbjct 97069731 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCTGGCATAAGACCTCTCTTCTTT 97069790 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 24278 ||||| ||||| | ||||| ||||| || ||||||||||||||||| || |||||||| Sbjct 97069791 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAGGCC 97069850 Query 24279 ATAAGTCTTTCTCC 24292 | | |||||| || Sbjct 97069851 ACCACTCTTTCCCC 97069864 >seq1 Length=126035930 Score = 114 bits (126), Expect = 2e-20 Identities = 128/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || |||||||| || |||||| ||| | || || || || ||||||| Sbjct 62608424 TCCAGCCGTAGAAGTGCATACTAGTGAGTTTGCCATAGTTAGGCTCAGCAATGTGGATAT 62608483 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 ||| |||||| |||||||| ||||| || || || || || ||||| || | | || | Sbjct 62608484 TCAAAGATTGGCTTTGATCAATGAAAGCACCTCTCTCAGCTGCCATCTTGAGAACGGTTT 62608543 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | ||||||||||| | |||| | || || |||| Sbjct 62608544 TCTGAGAGATTTCCCACACAGTTTTATAAAGTTGCTTCAGGTCATCAGGAA 62608594 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| ||||| ||||| || || || ||||| || ||||| | Sbjct 62611279 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTGCTGGTGTAAGGTTCAATG 62611338 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 ||||||||||| |||| || |||||||| || || || ||||| || || | | |||| Sbjct 62611339 GACTCATTATTCCCCAGGATCTGAGCAGTGGAAGCTGTAGGCATCGGGGCAATAAGTAAA 62611398 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 62611399 CTGTTTCTTATACCATA 62611415 Score = 104 bits (114), Expect = 3e-17 Identities = 104/135 (77%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||||||||| |||||||| |||||||||||||| | || |||||||||| | Sbjct 62622018 CTCCACTCGTTTCATGAAGAGATCCGGAATCCAAAGAGCAAAGAAAAGATCTCTGGCACG 62622077 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || |||||||| ||||| || | ||| ||||| | | || || ||||||| Sbjct 62622078 CTGCTCTTCCTTTCCTGTGTTCTTCTTTAAATCAAGGAATTCAAAGATGTCTAAATGCCA 62622137 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 62622138 AGGCTCCAGGTAAAT 62622152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||||| || || || || || || || || || | Sbjct 62638621 CACTGAACACTTTCTTTGTTTCTTTGTGTAAGTTAGAGACAGCAATCCTGGCTGCCAGGA 62638680 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | ||||| | || || ||| |||| || | || ||| || | Sbjct 62638681 TAGCATAGTCAGGGTGCTTAGTAGTCAAGGTTGCAGCTGTTTCAGCAGCCAAAGTATCTA 62638740 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || || ||| | || | |||||||| || ||||| Sbjct 62638741 GTTCCACTGTGGTGACCCCACTGTACAAGCCTTGGATTACTTTCAT 62638786 >seq240 Length=107702431 Score = 100 bits (110), Expect = 3e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 24397 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 24456 |||| | || || ||||| | ||||||||||||||| ||||| |||||||| ||||| | Sbjct 97517459 CTTTTATGTAAGTGTCAATAAGAAGACTATACATTTCAGAATGTATGTTTTCCATGGCAA 97517518 Query 24457 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTC 24514 |||| || || |||||||| | || || |||||||| |||||| | |||||| || Sbjct 97517519 TTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGAACTTCTTGGCTAAATCGCTC 97517576 >seq127 Length=125710982 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/209 (71%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 21883 TCCGGTTGATCCAAACCCT--TGATCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 21940 ||| || || ||||| ||| ||| | ||| | ||| ||| | || ||| |||||| Sbjct 85916273 TCCAGTGGAACCAAAACCTCCTGAACCCCTTTCGGTGTC--ATCCAAAGCTTGAACTTCT 85916330 Query 21941 TTCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCCCCCGTATTT 22000 | | |||||||||| | || |||| | || ||||| || |||| ||| ||| | || Sbjct 85916331 TCTATTTCTGGATAAAAAATCCGTTCGCAAATGAGCTGTGCAATTCGATCACCCTTTTTG 85916390 Query 22001 ACATTAAATGTATATTTTCCATTATTAATAAGAATGACTCCTATATTTCCCCTATAATCT 22060 || | ||| | | ||| ||| |||| || | || || | |||||| ||||||||| Sbjct 85916391 ACTTCAAACTTTTCTTTGCCAAAGTTAAACAGTACAACACCAACATTTCCTCTATAATCT 85916450 Query 22061 TCGTCTATTACACCGCCTCCTATATCAAT 22089 || ||||| ||||| |||||| |||||| Sbjct 85916451 TCATCTATGACACCAGCTCCTACATCAAT 85916479 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593706727273920