Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq98 113 4e-20 seq68 104 2e-17 seq227 102 7e-17 seq253 82.4 7e-11 >seq98 Length=135778131 Score = 113 bits (124), Expect = 4e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || ||||| ||| ||| |||||| Sbjct 2002565 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGGTGAACCC 2002624 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 2002625 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 2002684 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| || | || ||| Sbjct 2002685 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTAC 2002744 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 2002745 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 2002779 >seq68 Length=92142175 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||| | ||||| | ||||| || | ||| ||| ||| |||||| Sbjct 7889634 AAAATGCAGATTTTCGTGAAAACCCTTACGGGGAAGATCATCACCCTCGAGGTTGAACCC 7889693 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || ||| | | || | ||| || || ||||| ||||| | || ||| Sbjct 7889694 TCGGATACGATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGAT 7889753 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||||| |||||||| ||||| |||||||||||| ||| | | || ||| Sbjct 7889754 CAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTTTCTGACTAC 7889813 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 7889814 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 7889848 Score = 100 bits (110), Expect = 2e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | | ||| || ||||| ||| ||| |||||| Sbjct 62818792 AAAATGCAGATTTTCATGAAAACCCTTATGGGGAAGACCATCACCCTCGATGTTGAACCC 62818851 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 |||| ||| | | || | ||| | || ||||| ||||| | || | | Sbjct 62818852 TCAGATACGATAGAAAATGTAAAGGCCGAGATCCAGGATAAGGAAGGAATTCCTCCTGCT 62818911 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || |||||| |||||||| ||||| |||| ||||||| | ||| || | || ||| Sbjct 62818912 CAGCAAAGAGGGATCTTTGCTGGCAAGCAACGGGAAGATGCATGGACTTTGTCTGACTAC 62818971 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 |||||||| ||||| ||||||||||| | ||||| Sbjct 62818972 AATATTCAAAAGGAGTCTACTCTTCATCTTGTGTT 62819006 >seq227 Length=108555830 Score = 102 bits (112), Expect = 7e-17 Identities = 153/216 (71%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 |||||||| || ||||| ||||| | ||||| || ||||| ||| ||| | |||||| Sbjct 68205922 AAAATGCAGATTTTCATGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCC 68205863 Query 29019 GCAGAGACGGTGGCCGA-TCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 | || ||| | | | | ||| | || |||| ||||| | || || Sbjct 68205862 TCGGATACGATATAAAAATGTAAAGGCCGAGATCCAGAATAAGGAAGGAATTCCTCCTGA 68205803 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| |||||||| |||||||| ||||| |||||||||||| ||| || | || || Sbjct 68205802 TCAGCAAAGACTGATCTTTGCTGGCAAGCAACTGGAAGATGGACGTACTTTGTCTGACTA 68205743 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||||||| ||||| ||||||||||| | ||||| Sbjct 68205742 CAATATTCAAAAGGAGTCTACTCTTCATCTCGTGTT 68205707 >seq253 Length=75148670 Score = 82.4 bits (90), Expect = 7e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28956 GTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAA 29015 || |||||||| || ||| | || || |||| ||||| ||||| ||| || ||| Sbjct 15288274 GTCAAAATGCAGATCTTCGTGAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTGGAG 15288215 Query 29016 CCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTA 29075 ||| || || | | || | ||| ||||| ||||| ||||| | ||| Sbjct 15288214 CCCAGTGACACCATCGAAAATGTGAAGGCCAAAATCCAGGATAAGGAAGGCATTCCCCCC 15288155 Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 || || || || ||||||||||| ||||| || ||||||||| | ||| | | || Sbjct 15288154 GACCAGCAGAGGCTTATCTTTGCAGGCAAGCAGCTGGAAGATGGCCGCACTCTTTCTGAC 15288095 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 ||||| || |||||||| || || || ||| |||| Sbjct 15288094 TACAACATCCAGAAGGAGTCGACCCTGCACTTGGT 15288060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428325538428620