Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq331 217 2e-51 seq373 174 2e-38 seq283 159 4e-34 >seq331 Length=101219884 Score = 217 bits (240), Expect = 2e-51 Identities = 599/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Plus Query 9459 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 9517 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 7697166 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 7697224 Query 9518 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 9577 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 7697225 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 7697284 Query 9578 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 9637 || | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 7697285 TGCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 7697344 Query 9638 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 9697 || | | | | ||| | ||| || | | | ||||||| | ||| ||| Sbjct 7697345 ATGTCAG---GGAGCATAACTGGGTCTTCAGCCATGGCATGTGTAAGGTCCTCTCGGGGT 7697401 Query 9698 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 9757 | | | ||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 7697402 TTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 7697461 Query 9758 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 9815 | || || ||||| ||||||| ||| || ||| || || || || | ||| | Sbjct 7697462 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTGT 7697519 Query 9816 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 9875 | || | | |||||| ||||||| | | | || ||||||||| | || Sbjct 7697520 CATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTT 7697579 Query 9876 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 9934 |||| |||| | | || | || || | || |||||| || Sbjct 7697580 CTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGATA 7697638 Query 9935 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 9994 | | || ||||||| |||| | | ||| || || |||| | | | Sbjct 7697639 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTTGCTCTCC 7697698 Query 9995 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 10054 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 7697699 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 7697758 Query 10055 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 10114 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 7697759 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 7697818 Query 10115 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 10174 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 7697819 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 7697878 Query 10175 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 10234 | | |||| | ||||| | ||||| ||| ||||| | ||| | | |||| Sbjct 7697879 TTGACTGTGAACGGAGCAAGCATGTGGACCTGGTCGTGCTGGTGACAGAGGTGATTGCCT 7697938 Query 10235 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 10294 || | ||||| ||| | ||||||||||||||||| || || || |||| ||| | | Sbjct 7697939 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGT 7697998 Query 10295 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 10354 ||||| |||||||||||||| ||||| ||| |||| ||| |||||||| |||| Sbjct 7697999 ACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAGATACATCCCATTCC 7698058 Query 10355 TGTCTGGTGA 10364 | || |||| Sbjct 7698059 TTCCTAGTGA 7698068 Score = 217 bits (240), Expect = 2e-51 Identities = 599/910 (66%), Gaps = 11/910 (1%) Strand=Plus/Plus Query 176345 AGCTCAGGTGGTACCCGCCCTGTATCTGCTTGTGTTTCTCTTTGGGT-TGTTGGGCAATA 176403 ||| ||| | || ||| | |||||| || ||||| | || |||| | |||||||| Sbjct 7697166 AGCCCAGTTCGTGCCCCCGCTGTATTCCCTGGTGTT-CACTGTGGGCCTCTTGGGCAACG 7697224 Query 176404 TCTTAGTGGTGATTATTGTCATAAGATACATGAAGATCAAAAACCTCACTAACATGTTAC 176463 | | |||||||| || |||||| ||||| || | || || | || ||||| | | Sbjct 7697225 TGGTGGTGGTGATGATCCTCATAAAATACAGGAGGCTCCGAATTATGACCAACATCTACC 7697284 Query 176464 TGTTAAACTTGGCAATATCTGACTTGCTATTTCTTTTAACTTTGCCATTTTGGATGCACT 176523 || | ||| |||| || || ||| |||| || || || || | || || ||||| |||| Sbjct 7697285 TGCTCAACCTGGCCATTTCGGACCTGCTCTTCCTCTTCACCCTTCCGTTCTGGATCCACT 7697344 Query 176524 ATATTGGAATGTATCATGATTGGACTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTG 176583 || | | | | ||| | ||| || | | | ||||||| | ||| ||| Sbjct 7697345 ATGTCAG---GGAGCATAACTGGGTCTTCAGCCATGGCATGTGTAAGGTCCTCTCGGGGT 7697401 Query 176584 TGTGTTACATGTCACTGTACAGCCAGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGT 176643 | | | ||| |||||||| || |||||| ||| ||||| || || | ||||||| Sbjct 7697402 TTTATCACACAGGCTTGTACAGCGAGATCTTTTTCATAATCCTCCTGACGATTGACAGGT 7697461 Query 176644 ATCTAGCTGTTGTCTATGCTGTAACTGC--TTTGAGGTTTAGAACAGTAACCTGTGGCAT 176701 | || || ||||| ||||||| ||| || ||| || || || || | ||| | Sbjct 7697462 ACCTGGCCATTGTCCATGCTGTGTTTGCCCTTCGAGCC--AGGACTGTCACTTTTGGTGT 7697519 Query 176702 AGTTACCTGTGTATGTACCTGGTTTCTGGCAGGGTTGTTGTCCCTCCCTGAATTTTTCTT 176761 | || | | |||||| ||||||| | | | || ||||||||| | || Sbjct 7697520 CATCACTAGCATCGTCACCTGGGGCCTGGCAGTGCTAGCAGCTCTTCCTGAATTTATTTT 7697579 Query 176762 TCATGGACACCAAGATGACAATGGTAGGGT-TCAGTGTGATCCTTACTACCCAGAGATGT 176820 |||| |||| | | || | || || | || |||||| || Sbjct 7697580 CTATGGGACTGAAGA-GTTGTTTCCAGAGACTCTTTGCAGTGCTATTTACCCACAGGATA 7697638 Query 176821 CTACAAATGTTTGGAGGCGCGCCCACGTTGCAAAGGTGATTATGTTAAGTCTCATTTTGC 176880 | | || ||||||| |||| | | ||| || || |||| | | | Sbjct 7697639 CAGTATATAGCTGGAGGCATTTCCACACTCTGAGAATGACCATCTTGTGTCTTGCTCTCC 7697698 Query 176881 CTCTGCTCATTATGGCTGTCTGCTACTATGTAATTATCAGAAGACTGTTGAGGCGCCCCA 176940 |||||||| ||||||| |||||||| | ||| |||| || ||| ||||| |||||| Sbjct 7697699 CTCTGCTCGTTATGGCCATCTGCTACACAGGAATCATCAAAACGCTGCTGAGGTGCCCCA 7697758 Query 176941 GCAAGAAGAAGTACAAGGCCATCAGGCTCATCTTTGTCATCATGGTGGCCTATTTTGTTT 177000 | || || ||||||||||||||| ||||||| ||||||||||||| | | ||| ||| Sbjct 7697759 GTAAAAAAAAGTACAAGGCCATCCGGCTCATTTTTGTCATCATGGCTGTGTTTTTCATTT 7697818 Query 177001 TTTGGACACCCTACAACATTGTTCTCCTACTGTCTACCTTTCACGCAACCCTTCTTAACC 177060 | |||||||||||||| | | | |||| | ||||||| ||| | | | | || | Sbjct 7697819 TCTGGACACCCTACAATGTGGCTATCCTTATCTCTACCTATCAATCCATCTTATTTGGAC 7697878 Query 177061 TGCAGTGTGCATTGAGCAGTAACTTGGACATGGCTCTGCTGATAACAAAAACAGTAGCCT 177120 | | |||| | ||||| | ||||| ||| ||||| | ||| | | |||| Sbjct 7697879 TTGACTGTGAACGGAGCAAGCATGTGGACCTGGTCGTGCTGGTGACAGAGGTGATTGCCT 7697938 Query 177121 ACACACACTGTTGCATCAACCCAGTGATCTACGCGTTCGTGGGGGAGAAGTTTAGAAGAC 177180 || | ||||| ||| | ||||||||||||||||| || || || |||| ||| | | Sbjct 7697939 ACTCCCACTGCTGCGTGAACCCAGTGATCTACGCCTTTGTTGGAGAGAGGTTCCGGAAGT 7697998 Query 177181 ACCTGTACCACTTCTTCCACACCTACGTGGCCATCTACCTCTGCAAGTACATCCCCTTCC 177240 ||||| |||||||||||||| ||||| ||| |||| ||| |||||||| |||| Sbjct 7697999 ACCTGCGCCACTTCTTCCACAGGCACGTGCTCATGCACCTGGGCAGATACATCCCATTCC 7698058 Query 177241 TGTCTGGTGA 177250 | || |||| Sbjct 7698059 TTCCTAGTGA 7698068 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 176429 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 176488 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 7636606 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTTCTGAACCTGGCCATTTCTGACCT 7636547 Query 176489 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 176547 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 7636546 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCGACAG----ATGACTGGA 7636491 Query 176548 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 176607 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 7636490 TTTTCGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 7636431 Query 176608 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 176667 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 7636430 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 7636371 Query 176668 CTGCTTTGAGG 176678 ||| |||||| Sbjct 7636370 TTGCCTTGAGG 7636360 Score = 96.9 bits (106), Expect = 4e-15 Identities = 173/251 (69%), Gaps = 5/251 (2%) Strand=Plus/Minus Query 9543 ATACATGAAGATCAAAAACCTCACTAACATGTTACTGTTAAACTTGGCAATATCTGACTT 9602 ||||| || | |||||||| | || ||||| | || | ||| |||| || |||||| | Sbjct 7636606 ATACAAGAGGCTCAAAAACATGACCAACATCTACCTTCTGAACCTGGCCATTTCTGACCT 7636547 Query 9603 GCTATTTCTTTTAACTTTGCCATTTTGGATGCACTATAT-TGGAATGTATCATGATTGGA 9661 ||| || || || || |||| || | ||| |||| | | || | |||| |||| Sbjct 7636546 GCTCTTCCTGTTCACACTGCCCTTCTTGATCTACTACAAGTCGACAG----ATGACTGGA 7636491 Query 9662 CTTTTGGTATTTCCCTGTGTAAACTGCTCAGGGGTGTGTGTTACATGTCACTGTACAGCC 9721 ||| ||| | || ||||||| | ||| || | | ||||| |||||||| Sbjct 7636490 TTTTCGGTGATGCCATGTGTAAGATCCTCTCTGGGTTTTATTACACAGGCTTGTACAGCG 7636431 Query 9722 AGGTCTTTTGCATCATCCTGCTAACAGTAGACAGGTATCTAGCTGTTGTCTATGCTGTAA 9781 || |||||| |||||||||||| || | |||||||| || || | ||| |||| || Sbjct 7636430 AGATCTTTTTCATCATCCTGCTGACGATTGACAGGTACCTGGCCATCGTCCATGCCGTGT 7636371 Query 9782 CTGCTTTGAGG 9792 ||| |||||| Sbjct 7636370 TTGCCTTGAGG 7636360 >seq373 Length=85787240 Score = 174 bits (192), Expect = 2e-38 Identities = 133/157 (85%), Gaps = 3/157 (2%) Strand=Plus/Minus Query 138082 CAGCGCCTCAGCCTCACCCTGAGGGTTTTGAGCTTTTCCCCCAGGGAGTTCACTTTATCC 138141 ||||||| |||||||| ||||||||| || || || ||||||||||||||||| | ||| Sbjct 22592510 CAGCGCCGCAGCCTCAGCCTGAGGGTCTTCAGATTCTCCCCCAGGGAGTTCACATGCTCC 22592451 Query 138142 TTTTCCTGGTCGGTGCTGTGGTTCTCGGCCTGGGGCATCACCTCCTCCAGGTAAAACTGG 138201 || ||| | | ||||||||| || |||||||||||||||||||||||||||||| Sbjct 22592450 TTGAT---GTCTGGGTCGTGGTTCTCAGCTTGGGGCATCACCTCCTCCAGGTAAAACTGG 22592394 Query 138202 ATCATCTCAGACAGGGCCTGGCAGCCCAGGTAACCCT 138238 ||||||||||||| ||| ||||| ||||||||||||| Sbjct 22592393 ATCATCTCAGACAAGGCTTGGCAACCCAGGTAACCCT 22592357 Score = 120 bits (132), Expect = 4e-22 Identities = 84/96 (88%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137921 CTCAGTTTTTCATCTTTGTGGTCATGTAGGCCTCTATGTAGTTAATGAAGATGTCAAACT 137980 ||||||||| ||||| | ||||||||||| ||||||||||| |||||||||||||||| Sbjct 22594837 CTCAGTTTTGTATCTTCATTGTCATGTAGGCTTCTATGTAGTTGATGAAGATGTCAAACT 22594778 Query 137981 CGCTCATGGCCTTGTAGACCCCTTTTTCCTGGAGCT 138016 | |||||||| |||||||| ||||| || ||||||| Sbjct 22594777 CACTCATGGCTTTGTAGACACCTTTCTCTTGGAGCT 22594742 >seq283 Length=72318688 Score = 159 bits (176), Expect = 4e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 145750 AGGCCCGTGAGGTGGGCGACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGC 145809 |||||||||| ||| || | |||||| || ||||||| ||||||||| |||||||| ||| Sbjct 60039742 AGGCCCGTGATGTGCGCAATCATGTACGTGAGCAGGGCGTAGCTGGCGATGTTGAAAGGC 60039683 Query 145810 ACCCCCAGCCCCATGTCCCCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC 145869 || || || |||||||| ||||| | |||||||||||||||||| ||||| | | | || Sbjct 60039682 ACACCTAGGCCCATGTCTCCCGATCTCTGGTACAGCTGGCAGGACAGCTCACTGTTCACC 60039623 Query 145870 ACGTAGAACTGGCACAGGAGGTGGCAGGGCGGCAGGGCCAT 145910 || ||||||||||| ||| ||||| || ||||| ||||| Sbjct 60039622 ACATAGAACTGGCAGAGGGCATGGCATGGAGGCAGTGCCAT 60039582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590062018576160