Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq331 320 2e-82 seq233 129 7e-25 >seq331 Length=101219884 Score = 320 bits (354), Expect = 2e-82 Identities = 273/337 (81%), Gaps = 0/337 (0%) Strand=Plus/Plus Query 83057 AGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGC 83116 |||||||| |||||||| ||||| | | | | ||||||| ||||| ||||||||||||| Sbjct 10755210 AGCAGGGCTTCGATGTCAGGCTCGATGTCAATGGTCTGGAAGCGGCGGCTGTACCTGCGT 10755269 Query 83117 ACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGG 83176 |||||| ||||| | ||||||| ||||||||||||||||||||| || ||||||||| Sbjct 10755270 ACGGGCACACCGTCCGGGCCCACCAGGAACTTCTCGAAGTTCCAGGCAACATCGTTGCGG 10755329 Query 83177 CACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTA 83236 ||||| || ||||||| ||||||| ||||||| ||| ||||| | |||||||| Sbjct 10755330 CACACCGGTGACCAGGTGATGAGCTTGGGGTCGGTCATGAGCGCAGTGGCATCGTCGCTG 10755389 Query 83237 GGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCTTGCACCGTTGACC 83296 || || ||||||||||| || | |||||||||||| || || |||| |||||||| ||| Sbjct 10755390 GGGGCTGGCAGGGCCTCCCGCAAGAAGGCGAAGAGAGGGTGCGCCCCCGCACCGTTCACC 10755449 Query 83297 TCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTC 83356 |||||||||||||||||||| ||||| |||||||| || ||||| ||||||| ||| Sbjct 10755450 TCGCACTTCTCGAAGAGCATGAAGTTGGGCTCGAACCCACCACCAGGTCGGACGTACTTG 10755509 Query 83357 AGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCT 83393 |||||| || ||||| | |||| |||||| |||| Sbjct 10755510 AGGGAATTCAGAATCTCTTCGTTCTTGGCGTTCTCCT 10755546 Score = 217 bits (240), Expect = 2e-51 Identities = 200/253 (79%), Gaps = 0/253 (0%) Strand=Plus/Plus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || || |||||||| |||||||| || ||||| ||||| ||||| | || |||| Sbjct 10756273 CCTGATGCCCAAACTGGTTGCACGGGAAGCCGAGCACCACCAGGCCCCGGGGCCCAAGGC 10756332 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 |||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| | Sbjct 10756333 GCCGCTGCAGCTCGTTCATCTGGGTGTAGTCCCGGACCGTGGTGCCTCAGAGGGACGCCA 10756392 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | |||||||| || | ||| |||||| | | |||| | ||||||||| || || |||| Sbjct 10756393 CATTCTCGATAAGTAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCCCCGCCGG 10756452 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACACAGATCTGGTCTCTGCCGCGGCAAGCTGTGCCG 83630 | |||||| || |||||||||||||| || || | ||||||| | ||| | || | Sbjct 10756453 CCAGCGGGCGCGCCGAGAAGGCGTACACCGACTGGGCCGCTGCCGCCACTAGCCGAGCAG 10756512 Query 83631 CGTACTTGGCACA 83643 | || |||| || Sbjct 10756513 CACACATGGCGCA 10756525 >seq233 Length=98384682 Score = 129 bits (142), Expect = 7e-25 Identities = 208/291 (71%), Gaps = 15/291 (5%) Strand=Plus/Plus Query 50410 GCACCTGCGCAAGATGTACG-GCGCAAGCAGGTCTATCTACAACTTCGCTGTGCGTATGC 50468 ||| ||||||| || |||| | ||| || ||| ||| |||||||||| ||| ||| Sbjct 66784857 GCAGCTGCGCAGCATCTACGAGAGCA-GCCTGTCCATCGGCAACTTCGCTTCGCGCCTGC 66784915 Query 50469 TCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACTGCT 50528 | ||| || |||| || |||||||| || |||||||||| || ||| | |||||| Sbjct 66784916 TGGTGCACCTGTTCCCTGAGCTCTTCACGCACGAGAACCTGCGCAAGCAGTATAACTGCA 66784975 Query 50529 ACGGCTCCATGGGCAAGC-GCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCACTAT 50587 ||||||| |||||||| |||| || |||||| ||| | | |||| ||||| Sbjct 66784976 GCGGCTCCCTGGGCAAGAAGCAG-CTGGACCCGTCCCGCATCAAGCTCATCCGCCACTAC 66785034 Query 50588 GTGCAGTTGCTGCACCCGGCGGCGCGC----AACGAGCGCGTGTGGATCACAAAGTTCCT 50643 |||||| |||| |||| ||||| ||||| ||||| |||| | ||||| | Sbjct 66785035 GTGCAGCTGCTCTACCCA----CGCGCCAAAAACGACCGCGTCTGGACCCTGGAGTTCGT 66785090 Query 50644 GGCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 || ||||| ||||||||||||||||| | |||||| || |||||| Sbjct 66785091 GGGCAAACTGGATGAGCGCTGCCGGCGCCG--GGACACGGAGCAGAGGCGC 66785139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608781549640160