Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq247 143 2e-29 seq98 125 6e-24 seq223 118 9e-22 seq253 111 1e-19 seq315 98.7 9e-16 seq227 98.7 9e-16 seq68 91.5 1e-13 seq422 89.7 4e-13 seq113 87.8 2e-12 >seq247 Length=91754291 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| || | |||||| ||| Sbjct 30514630 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATC 30514689 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || ||||||||||| || || || || ||||||||||| Sbjct 30514690 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 30514749 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || ||||||||||| ||| | || Sbjct 30514750 TTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 30514809 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| || || || || ||||| ||||||||| Sbjct 30514810 TTTGCCCGTGAGGGTCTTCACAAAGATCTGCATG 30514843 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || |||||||| |||| ||| || | ||| || ||| Sbjct 72049791 CAGCACCAGGTGCAGGGTGGACTCTTTCCAGATGTCGTAGTCTGAGAGAGTTCGGCCATC 72049732 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || || ||||||||||| Sbjct 72049731 CTCCAGCTGTTTGCCGGCAAGTATCAGATGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 72049672 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || |||||| || || ||||| | || | || Sbjct 72049671 TTGAATTTTGGCTTTGACATCCTCATTGGTGTCACTGGGCTTAACCTCAAGAGTGATGGT 72049612 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| |||||||| Sbjct 72049611 CTTGCCCGTAAGGGTCTTCACAAAGATCTGCAT 72049579 >seq98 Length=135778131 Score = 125 bits (138), Expect = 6e-24 Identities = 156/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 |||||||| ||| | || |||||||| || |||||||| | | |||||| ||| Sbjct 37173951 CAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCATC 37173892 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || |||||||| || || | || ||||||||||| || || || || ||||||||||| Sbjct 37173891 TTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTC 37173832 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| ||| || | || | |||||| || ||||||||| | ||| | || Sbjct 37173831 TTGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGT 37173772 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 |||||| | || || | ||||| ||||||||| Sbjct 37173771 TTTGCCCGGGAGGGTCGTCACAAAGATCTGCATG 37173738 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 2002795 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 2002736 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 2002735 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2002676 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || | Sbjct 2002675 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCACC 2002616 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | || || || || || ||||| || ||||||||||| Sbjct 2002615 CTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 2002568 >seq223 Length=128539186 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||||||| || |||||||| || || |||||| ||| || Sbjct 120278175 CACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCTTC 120278234 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||||||||| |||| | | ||| || || ||||| ||||| ||||| || Sbjct 120278235 CAGCTGTTTTCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCCTG 120278294 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || ||| || || | |||| |||||| || ||| ||||||| ||| | || || Sbjct 120278295 GATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTCTT 120278354 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 120278355 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278384 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || |||| ||| | || |||||||| || ||||| || || | | |||| ||| Sbjct 110883114 CAGCACCGGGTGCAGGGTGGACTCTTTCTGGATGTTCTAGTCTGAGAGACTGCGGCCATC 110883173 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||||| || || | || |||| ||| || || || | |||||||||||||| Sbjct 110883174 CTCTGGCTGTTTGCCCGCAAATATCAGACACTGGTGGTCAGGCAGGATGCCCTCCTTGTC 110883233 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||| ||| || | || |||||| || ||| ||||| | ||| | || Sbjct 110883234 TTGGATTTCGGCTTTGACATTCTCAGTGGTGTCACTGGGCTCCACCTCAAGGGTGATGGT 110883293 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCTTATTCTATTACTCG 118756 ||||| | ||||| || ||||| |||||||| || | ||| | |||| Sbjct 110883294 CTTGCCCATGAGAGTGTTCACAAAGATCTGCATCTCTGAGTCTGTAGCTCG 110883344 >seq253 Length=75148670 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 15288060 ACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 15288119 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || |||| || | |||||| ||||| || ||||| ||||| || Sbjct 15288120 AGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGG 15288179 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 15288180 ATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTCTTG 15288239 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 15288240 CCGGTCAGGGTCTTCACGAAGATCTGCAT 15288268 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || ||||| || || |||||||| || | |||||| ||| || Sbjct 15279438 ACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 15279497 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||| | |||||| || || || ||||| || || || Sbjct 15279498 AGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCCTGG 15279557 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | ||||| |||||| || ||| ||||| | ||| | || ||| Sbjct 15279558 ATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 15279617 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || || || |||||||| Sbjct 15279618 CCGGTCAGGGTCTTCACGAAGATCTGCAT 15279646 Score = 87.8 bits (96), Expect = 2e-12 Identities = 154/224 (69%), Gaps = 4/224 (2%) Strand=Plus/Minus Query 118515 CCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATA 118574 || || | |||||| || || || | ||||||||||||||||| ||||| ||| | Sbjct 9604671 CCACGAAGTCTCAATACAAAATGAAGAGTAGACTCTTTTTGAATATTGTA----GTCAAA 9604616 Query 118575 GTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATG 118634 || || ||| || || || || ||||| || | || | ||||||| ||||||| || Sbjct 9604615 GTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGTTCAGTCTCTGCTGACCGGGAGGAATT 9604556 Query 118635 CCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCG 118694 || ||||| | || || || || | || | || |||| | || |||||| Sbjct 9604555 CCTTCCTTAACCTGGATCTTGGCCTTTACATTTTATATCGTATCCGAGGGTTCAACCTCG 9604496 Query 118695 ACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||| | || || || || || ||||| || ||||||||||| Sbjct 9604495 AGGGTGATGGTCTTCCCTGTAAGGGTTTTCACGAAAATCTGCAT 9604452 >seq315 Length=127223203 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 118545 GACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCG 118604 |||||||| || |||||| | || | |||||| |||||| |||||||| || || Sbjct 32668488 GACTCTTTCTGGATGTTGCAGTCTGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCTGCA 32668429 Query 118605 TAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACC 118664 | || |||| ||| || || | || |||||||||||| || |||||| || || Sbjct 32668428 AATATCAGACACTGTTGGTCAAGTGGGATGCCCTCCTTGGCTTGAATTTTGGCCTTGACA 32668369 Query 118665 TGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTT 118724 | || |||||| || || |||||||| ||| | || ||||| || || || || Sbjct 32668368 TTCTCAGTGGTGTCACTGGGCTTGACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTCTTC 32668309 Query 118725 ACAAAAATCTGCAT 118738 ||||| |||||||| Sbjct 32668308 ACAAAGATCTGCAT 32668295 >seq227 Length=108555830 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| ||| | || |||| |||||| |||||||| || | ||||| |||||| Sbjct 57866724 CACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTC 57866783 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || ||||| | || ||||||||||| || || || || ||||| | |||| Sbjct 57866784 CAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGTCTTG 57866843 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| | | || ||||| || ||||||||| | | | | || || Sbjct 57866844 AATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCTT 57866903 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 ||| || || || || ||||| | |||||| ||| Sbjct 57866904 GCCCGTGAGGGTCTTCACAAAGAGCTGCATAGCT 57866937 >seq68 Length=92142175 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||| | || | |||||||| |||||||| ||||| || Sbjct 7889864 ACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGAATATTGTAGTCAGA 7889805 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 | ||| || ||| || || || || ||||| |||| || | |||||||| ||||| Sbjct 7889804 AAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 7889745 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | || |||| | || || Sbjct 7889744 AATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTATCCGAGGGTTCAAC 7889685 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| ||| | | || || || || ||||| || ||||||||||| Sbjct 7889684 CTCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 7889637 >seq422 Length=24206276 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||| || | || |||||||| || ||||| ||||| | |||| | |||||| Sbjct 21869801 CACCACCTGCAGGGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTGTGGCCATCCTC 21869742 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 | |||||| || | | || ||| ||||||| || || || |||||||||||||| Sbjct 21869741 CAACTGTTTGCCCACAAATATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTCATG 21869682 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||| || | ||| |||||| || | |||||| | ||| | ||| | Sbjct 21869681 GATCTTGGCTTTGACATTTTCACTGGTGTCACTGGGATGGACCTCAAAGGTGATGGTTCT 21869622 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || || || || |||||| | ||||||||| || Sbjct 21869621 TCCTGTGAGGGTCTTTACAGAGATCTGCATGTCT 21869588 >seq113 Length=139301422 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| ||| | || | |||||| || ||||||| || | ||||| ||| Sbjct 117814159 CAGCACCAGGTGCAGAGTGGGCTCTTTCTGGCTGTTGTAGTCTGAGAGAGTGCAGCCATC 117814100 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| |||||||| || || || ||| ||||||| || || || |||||||||||||| Sbjct 117814099 CTCCAGCTGTTTGCCCGCAAGTATCAGATGCTGCTGGTCAGGTGGGATGCCCTCCTTGTC 117814040 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 | |||||| || || | || |||||| || ||||| ||| | |||| Sbjct 117814039 TTGAATTTTGGCGTTGACATTCTCAGTGGTGTCACTGGGCTCGATCTCAAAGGTC----- 117813985 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || ||||| ||||||| Sbjct 117813984 -TTGCCTGTGAGGGTCTTCACAAAGGTCTGCAT 117813953 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433819804234768