Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq247 129 7e-25 seq223 114 1e-20 seq98 111 2e-19 seq253 109 6e-19 seq270 105 8e-18 seq299 102 9e-17 seq201 93.3 5e-14 seq227 86.0 7e-12 >seq247 Length=91754291 Score = 129 bits (142), Expect = 7e-25 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| || | ||||| || | Sbjct 30514628 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCA 30514687 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 30514688 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 30514747 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||||| || | || || |||| ||||| Sbjct 30514748 T-CTTGAATTTTGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGAT 30514806 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 |||||||||||| || ||||| |||||||| ||||| ||| || Sbjct 30514807 GGTTTTGCCCGTGAGGGTCTTCACAAAGATCTGCATGTTTGCG 30514849 Score = 82.4 bits (90), Expect = 9e-11 Identities = 53/57 (93%), Gaps = 1/57 (2%) Strand=Plus/Minus Query 60074 CAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTA 60130 |||||||| ||||| |||||||||||||||||||||| |||||||||||||||||| Sbjct 4767859 CAGGGAATTGAACC-TGGTCTCCCGCGTGACAGGCGGGAATACTCACCACTATACTA 4767804 >seq223 Length=128539186 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | |||||| |||| ||| ||| || || || ||||| |||| | Sbjct 120278386 CCACCTCTGAGGCGGAGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 120278445 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || ||| | || || |||||||| || || || || || | ||||||||||| || Sbjct 120278446 AGGGTGCGCCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGA 120278505 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||||||| ||| ||| |||| | | | ||||| || | || || Sbjct 120278506 ATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACC 120278565 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | |||||||| ||||| || || ||||| || ||||| |||||| Sbjct 120278566 TCAAGGGTGATGGTCTTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 120278613 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 91406471 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 91406412 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 91406411 TACTAACGAGGA 91406400 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 120291496 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120291555 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 120291556 TACTAACGAGGA 120291567 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 120296149 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 120296208 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 120296209 TACTAACGAGGA 120296220 Score = 93.3 bits (102), Expect = 5e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 93809843 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 93809784 Query 60125 ATACTACCGAGGATTG 60140 |||||| |||||| || Sbjct 93809783 ATACTAACGAGGAGTG 93809768 >seq98 Length=135778131 Score = 111 bits (122), Expect = 2e-19 Identities = 160/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||||||||| |||| ||| ||| || || || ||||| | | ||||| || | Sbjct 37173953 CGCAACACCAGGTGCAGCGTGGACTCTTTCTGGATGTTGTAGCCTGAGAGAGTGCGGCCA 37173894 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||| || || || ||||| || ||||||||||| | || | | ||||||| Sbjct 37173893 TCTTCCAGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTG 37173834 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 || ||| |||| | ||||| || | | ||||| || | || || || | ||||| Sbjct 37173833 TCT-TGAATTTTGGCTTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGAT 37173775 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTACG 43190 ||||||||||| || ||| | |||||||| ||||| ||| || Sbjct 37173774 GGTTTTGCCCGGGAGGGTCGTCACAAAGATCTGCATGTTTGCG 37173732 >seq253 Length=75148670 Score = 109 bits (120), Expect = 6e-19 Identities = 164/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | |||| ||||| |||| || |||||| || || ||||| |||| Sbjct 15288042 CCACCTCTCAGGCGCAGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAA 15288101 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || | || || |||||||| || || || || || | ||||||||||| || Sbjct 15288102 AGAGTGCGGCCATCTTCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGA 15288161 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 43136 | || ||||| ||| |||||| || | | | | ||||| || | ||||| Sbjct 15288162 ATGCCTTCCTTATCCTGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACC 15288221 Query 43137 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTTAC 43189 || | |||||||| ||||| || || ||||| || ||||| |||||||| || Sbjct 15288222 TCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTTGAC 15288274 Score = 105 bits (116), Expect = 8e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||| Sbjct 7592040 TTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCAC 7592099 Query 60124 TATACTACCGAGGATTGA 60141 ||||||| |||||| ||| Sbjct 7592100 TATACTAACGAGGAGTGA 7592117 >seq270 Length=71996105 Score = 105 bits (116), Expect = 8e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 45018674 TTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 45018733 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 45018734 ACTATACTAACGAGGA 45018749 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||||||| Sbjct 44945861 TTGTCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACC 44945802 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 44945801 ACTATACTAACGAGGA 44945786 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||| ||||||| ||||||||||||||||||||| |||||||||||| Sbjct 45040057 TCTCCCCGTCGGGGAACCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 45040116 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 45040117 ATACTAACGAGGA 45040129 >seq299 Length=130588469 Score = 102 bits (112), Expect = 9e-17 Identities = 83/99 (84%), Gaps = 5/99 (5%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 2485589 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 2485648 Query 60125 ATACTACCGAGGA----TTGAATATATAACTTGAATATT 60159 |||||| |||||| || | || ||||||||| ||| Sbjct 2485649 ATACTAACGAGGACGACTTCAGAAT-TAACTTGAAAATT 2485686 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 2539618 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 2539559 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 2539558 TACTAACGAGGA 2539547 >seq201 Length=128595539 Score = 93.3 bits (102), Expect = 5e-14 Identities = 63/71 (89%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 60067 TCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTAT 60126 ||| || | ||||||||||||| ||||||| ||||||||||||| |||||||||||||| Sbjct 31627498 TCCCCGTCGGGGAATCGAACCCCGGTCTCCTGCGTGACAGGCGGGGATACTCACCACTAT 31627439 Query 60127 ACTACCGAGGA 60137 |||| |||||| Sbjct 31627438 ACTAACGAGGA 31627428 >seq227 Length=108555830 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 ||||| |||| ||| || ||||| || ||||| || | ||||| | | || || Sbjct 57866724 CACCAGGTGCACGGTGGACTGTTTTTGGATGTTGTAGTCTGAGAGAGTGCAGCCATCCTC 57866783 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| ||||| ||||| || ||||||||||| | || | | ||| | || | | Sbjct 57866784 CAGCTGCTTGCCAGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCTTCGT-CTT 57866842 Query 43094 GATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTT 43152 || |||| | ||||| || | |||| || | || || || | ||||||| | Sbjct 57866843 GAATTTTGGCTTTGAAATTCTCAGTGGTGTAACTGGGCTCGACCTCAAGGATGATGGTCT 57866902 Query 43153 TGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||||| || ||||| ||||||| ||||| Sbjct 57866903 TGCCCGTGAGGGTCTTCACAAAGAGCTGCAT 57866933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571803275969120