Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq68 107 3e-18 seq98 102 1e-16 seq227 95.1 2e-14 seq201 84.2 3e-11 >seq68 Length=92142175 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 7889863 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 7889805 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 || ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 7889804 AAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 7889745 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 7889744 AATTCCTTCCTTATCCTG 7889727 Score = 87.8 bits (96), Expect = 3e-12 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 62819021 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 62818963 Query 146110 AAGAGTTC-TGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | ||| | ||| ||| || ||| || |||||||| ||| |||||||||| | |||| Sbjct 62818962 CAAAGTCCATGC-ATCTTCCCGTTGCTTGCCAGCAAAGATCCCTCTTTGCTGAGCAGGAG 62818904 Query 146169 GAATTCCTTCTTTATCTTG 146187 |||||||||| ||||| || Sbjct 62818903 GAATTCCTTCCTTATCCTG 62818885 >seq98 Length=135778131 Score = 102 bits (112), Expect = 1e-16 Identities = 107/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 2002794 CCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 2002736 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 2002735 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 2002676 Query 146170 AATTCCTTCTTTATCTTG 146187 ||||||||| ||||| || Sbjct 2002675 AATTCCTTCCTTATCCTG 2002658 >seq227 Length=108555830 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/134 (77%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| |||||| || || | ||| | |||||| || ||| || ||||| || || || Sbjct 68205692 CCACCATGAAGTCTCAACACGAGATGAAGAGTAGACTCCTTTTGA-ATATTGTAGTCAGA 68205750 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| | | ||| || | ||| || |||||||| |||| |||||||||||| ||||| Sbjct 68205751 CAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGG 68205810 Query 146170 AATTCCTTCTTTAT 146183 ||||||||| |||| Sbjct 68205811 AATTCCTTCCTTAT 68205824 >seq201 Length=128595539 Score = 84.2 bits (92), Expect = 3e-11 Identities = 193/278 (69%), Gaps = 32/278 (12%) Strand=Plus/Plus Query 112530 ATATTTTATATAAATTATGTTCTGAAGAT-ATTATAATTCCCGATGATAG--ttatataa 112586 ||||| |||||||||||| | | | || |||||||| || |||| |||||||| Sbjct 91704802 ATATTATATATAAATTATATATTATATATAATTATAAT-----AT-ATAGTATTATATAA 91704855 Query 112587 ----ataatttaaattataatgatatgtttatatctgaaataatgggattta--ataaaa 112640 || || ||| |||||| |||||| | | | | ||||| || || ||| || Sbjct 91704856 TTATATTATATAATATATAATAATATGT---TGTATTATATAAT---ATATAATATATAA 91704909 Query 112641 ttatgagacaatttatagaattattta-aaagaaatatt---tattatataagaaagaat 112696 |||||| |||| |||| ||||| || || | ||||| |||||||| | || ||| Sbjct 91704910 TTATGATACAA--TATATAATTACATATAATTATATATTATATATTATAT-ATAATTAAT 91704966 Query 112697 atattattatttgttattataaattttattttatctatattaattgtttatgtgggtatt 112756 |||| ||||| | |||| | | |||| |||| |||| | | | | || | ||||| Sbjct 91704967 ATATAATTATATATTATATCATCTATTATATTATATATAATCAATATATAATTATGTATT 91705026 Query 112757 g--tatatattaaaaagtatgaaaatttatatttatat 112792 | ||||||| | | | ||| | |||||||||||||| Sbjct 91705027 GATTATATATAATATATTAT--ATATTTATATTTATAT 91705062 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743507774663680