Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq423 205 9e-48 seq113 111 1e-19 seq240 98.7 9e-16 >seq423 Length=130038232 Score = 205 bits (226), Expect = 9e-48 Identities = 484/719 (67%), Gaps = 23/719 (3%) Strand=Plus/Plus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 ||||| || || |||||||| |||||||| || || |||| | ||||||||| ||| Sbjct 41477802 TGATACTCCCTTACTCTCTTCTCAAAGAAGTTCGTCTTTC-----AGTGAAATATTCTCC 41477856 Query 16007 ATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGC---ATCCCAATTCCAACAAT 16063 ||||| ||||| || || | | || | | | | || | |||| ||||| || Sbjct 41477857 ATAAAGTCAAATGGGTTCTCT--ACTCT-GAAAACCTTGCTAAAACCCAGTTCCAGCATG 41477913 Query 16064 AATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 16123 || || | |||||| || || || || ||| ||| | || ||||| || || | Sbjct 41477914 C--CTGTCTGTCACAAACTCAATGTATTGCTTCCTTAGAGTGCAATTCATCCCAATGAGC 41477971 Query 16124 TTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTATA 16183 || ||||| | || || || | || | | |||||| ||| || | || ||| | Sbjct 41477972 TTCACAGGCAAGGCCTCAGTGAGGAAGTCCTGTTCTATCCGAACAGCATTGATAATTCTT 41478031 Query 16184 TCTCTTACTACACTATTT-AACGGAGGGTTTAATAAGTGTTTAAACATTATACAAGCAAA 16242 ||||||| | | || | || || || || | ||| || ||||| | |||||||| Sbjct 41478032 TCTCTTATT-CTCTCCTCCAATGGTTTGTGTACCAGGTGATTGAACATCAGGCAAGCAAA 41478090 Query 16243 ATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCAT 16302 |||||| || || || || || || || || | || || |||||||| || || ||||| Sbjct 41478091 ATCACAGTGTAAACCCTCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCAT 41478150 Query 16303 TAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTC 16362 ||||||||||| || | ||| ||||| | ||||| ||||||||||| || ||||| Sbjct 41478151 CAGTCCTCGTTTCTTGAGCCAGAATATCGATGCAAAATAACCAGAAAAG---ATGCCTTC 41478207 Query 16363 AACTGCGGCAAATGCAACCAATCGCTCACCGTACGT-TCT-Atttttactttctatccat 16420 |||| ||||| | || | || || || || || || |||| | | | ||||| Sbjct 41478208 CGCTGCAGCAAAGACTACAACACGTTCCCCATAGGTAGCTGATTTGTCC--CCAATCCAG 41478265 Query 16421 tttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATAAA 16480 | ||||||| ||| || | ||| ||||| ||| | || || ||||| || | Sbjct 41478266 TGCAAGGCCCAATCTGCCTTCTTTTTGACACAAGGCATCGTTTCAATGGCATTGAAGCGA 41478325 Query 16481 TAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAA 16540 | | |||||||| |||| || ||||| || | || |||||||||||| | ||| Sbjct 41478326 AATTCCCTTTCTTTGGGATCTTTTATGTAAGTGTCAGTAAGGAAACTATACATTCCAGAA 41478385 Query 16541 TGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACT 16600 || || || ||||| || || || || ||| | || || | ||||| | | || ||| Sbjct 41478386 TGTATGTTTTCCATGGCAATTTGGAAGCCACAGAAACAGCGGGCTTCTGTCACCTGAACT 41478445 Query 16601 TCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAA 16659 || | ||| | || | |||||| | || ||||| ||||| || || ||||| || Sbjct 41478446 TCTTGGCTAAATCGCTCCACCAAGTTTGCATTTACTATGCCATCACTTGC-GCAAAGAA 41478503 Score = 111 bits (122), Expect = 1e-19 Identities = 299/455 (66%), Gaps = 3/455 (1%) Strand=Plus/Minus Query 16235 CAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGA 16294 |||||||| | ||| || || || || || || || || | || || ||||||| || Sbjct 119131889 CAAGCAAAGTAACAGTGTAAACCCTCATCACTGCTAATAAGTTCATTGAAAAATGTGAGG 119131830 Query 16295 CCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAAT 16354 || ||||| |||||| |||| || | ||| ||||| ||||| |||||||||||||| Sbjct 119131829 CCAGGCATCAGTCCTTGTTTCTTGAGCCAGAATATCAGTGCAAAAGAACCAGAAAAGAAG 119131770 Query 16355 ATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttct 16414 | | ||| ||| |||||| || | | || || || | || | ||| | | Sbjct 119131769 GTGCTTTCCACTAGGGCAAAGGCTGCAACACGTTCTCCATGGGTAACGTCTTTGTTCCCA 119131710 Query 16415 atccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTA 16474 ||||| ||||| ||| || | || |||||| ||| | || || ||||| Sbjct 119131709 ATCCAACACAAGACCCAAACTGCCTTCTTCTTGACACAG-GCATTGTTTCAATGGCATTG 119131651 Query 16475 AATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATT 16534 || | | | | |||||||| ||||| ||| | || || || || | ||||| || Sbjct 119131650 AAGAGAAATTCCCTTTCTTTGTTATCTTTAATGT--GTGTCAATAAGGAGACTATTTATG 119131593 Query 16535 TCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATT 16594 || ||||| || || || || || || || || ||||| ||||| | ||| | || Sbjct 119131592 TCAGAATGTATGTTTTCTATAGCAATTTGGAAGCCATAGAAGCAGAAGGTTTCTGTAATC 119131533 Query 16595 TGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCA 16654 || | ||| ||| ||| | | |||||| | ||||| ||||| | |||||| Sbjct 119131532 TGAATTTCTTGAACAAATTGTTCCACCAGGTTTTCATCTACTATCCCATCACATGCTGCA 119131473 Query 16655 AAAAACGCAAGTATGTGTTTAATAAAAtttttttC 16689 || || || || || | ||||||| | |||| Sbjct 119131472 AAGAAAGCCAGAATATAGGATATAAAATATCTTTC 119131438 >seq113 Length=139301422 Score = 111 bits (122), Expect = 1e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 15885 TTTAAAAATCAATATCTAGAGAAAACACATTATCTTTTTTATTTGACATAACTGACATTT 15944 |||||||||| ||| | | || || |||||| | | | || |||||||| | Sbjct 97058729 TTTAAAAATCTGCATCCAAGGTGAAGACGTTATCTGTAGTTTCTGCCATAACTGCAAAAC 97058788 Query 15945 TTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTT 16004 ||||| || ||||| || |||||||||||||||||||||||||| ||||| |||| Sbjct 97058789 GCTGATACTCCGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 97058848 Query 16005 CCATAAAATCAAAAGGATTTTTTG 16028 ||||||||||||||||||||| || Sbjct 97058849 CCATAAAATCAAAAGGATTTTCTG 97058872 >seq240 Length=107702431 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16259 TCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTA 16318 || || || || || | || || |||||||| || || ||||| ||||||||||| || Sbjct 97514987 TCATCTCTGCTGATAAGTTCATTGGAAAATGTGAGGCCAGGCATCAGTCCTCGTTTCTTG 97515046 Query 16319 ATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCA 16378 | ||| ||||| | ||||| ||||| |||||||| || ||||| ||||| ||||| || Sbjct 97515047 AGCCAGAATATCGATGCAAAAGAACCGGAAAAGAAGATGCCTTCCACTGCAGCAAAGGCT 97515106 Query 16379 ACCAATCGCTCACC 16392 || | || ||||| Sbjct 97515107 ACGACACGTTCACC 97515120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462500414074400