Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq379 1516 0.0 seq227 140 2e-28 >seq379 Length=58131712 Score = 1516 bits (1680), Expect = 0.0 Identities = 1360/1697 (80%), Gaps = 51/1697 (3%) Strand=Plus/Minus Query 107097 AGCTGGTTTGCAGCATCAGGTTACAGATGTCCATCCACAA------------GGGTCT-T 107143 |||| ||||| || ||||||||||||| |||||| || | |||| | | Sbjct 23888856 AGCTAGTTTGTAGGGTCAGGTTACAGATCTCCATCAACGAACCAGATGTAAGGGGTTTCT 23888797 Query 107144 AGGCAGGACTTGACTGAGGATATTTGTCTATAGAAGACATCTATCTTTACCATCACTCTG 107203 ||||||| ||| ||| |||||| ||||| | |||| | | | ||| |||||| | || Sbjct 23888796 AGGCAGGTCTTTACTAAGGATACTTGTCCAGGTAAGAACTATTT-TTTGCCATCAGTTTG 23888738 Query 107204 GAGTTGAACTTGATGTT-CTGG-----ATTAGTTTGTAATTAAAGGCATTTTGTTCTGTC 107257 || |||||||||||||| |||| || ||||||||| | ||||||||||||||||| Sbjct 23888737 GAATTGAACTTGATGTTTCTGGGAATGATGAGTTTGTAACTGGAGGCATTTTGTTCTGTC 23888678 Query 107258 CAAGGATC---TCCTCCTCCACCTTGCCTGTGCCCAAACTCT-CCTGATCTCCCATCCCA 107313 ||||||| |||||||| |||| |||||| ||| ||| |||| ||| || | || Sbjct 23888677 CAAGGATTGTGTCCTCCTCTTCCTTCCCTGTGGTCAATCTCCACCTG-TCTACCCTTCCG 23888619 Query 107314 TGAAGATGGCTGGGTGGAAGAAGAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCT 107373 || |||| | ||||||| || || ||| || ||| | |||||| |||||||| Sbjct 23888618 AGACAATGGTTCAATGGAAGA-GA--CTCTGCTGGCAGCATTACTTGTGGGTCCTGGGCT 23888562 Query 107374 GCTATATGCTGCTGGCCGTTGTTTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAG 107433 ||| ||||||||||||| |||| |||||| |||||| | | ||| || ||||| | Sbjct 23888561 GCTGTATGCTGCTGGCCATTGTGGCTCTGAAACTTTCTTTAACGTTGAAGTGTGACTCTG 23888502 Query 107434 ATTCCTTGGATCTGGAGTCCAGGGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACA 107493 | ||||| ||||||||||||||| || || || ||| |||||||| | || ||||| | Sbjct 23888501 ACCACTTGGGTCTGGAGTCCAGGGAATTTCAAAGCCAGTACTGTAGGAATATCTTGTATA 23888442 Query 107494 ATAGCCTGAAGCTGCCAGCAAAGAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACC 107553 || |||||| |||||||||||||| || ||||||||||| |||||||| |||||||||| Sbjct 23888441 ATTCCCTGAAACTGCCAGCAAAGAGGTCTATCAACTGTTCAGGGATCACCCGAGGGGACC 23888382 Query 107554 AGGAAGCAGTGGTCCAGGCCCTCCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTC 107613 ||||| ||| | ||||| | || | |||||||| |||||||| |||||| |||| Sbjct 23888381 CAGAAGCCGTGTTTCAGGCTATTCTGAATAACCTGGAGGTGAAGAAGAAGCGGGAGCCTT 23888322 Query 107614 TCACTGGCACCTATTACCTCAACATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGA 107673 | || | |||| | || ||| | | |||||||||||||| ||||||||||| |||||| Sbjct 23888321 TTACAGACACCCACTATCTCTCCCTCACCAGAGACTGTGAACGCTTCAAGGCGGAAAGGA 23888262 Query 107674 AGTTCATACAGTTCCCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGG 107733 |||||||||||||||||||||| ||||||||| | || ||||| ||||| ||||| |||| Sbjct 23888261 AGTTCATACAGTTCCCACTGAGCAAAGAAGAGGTGGAGTTCCCTATTGCGTACTCTATGG 23888202 Query 107734 TGGTCCATGAGAAGATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGA 107793 || | |||||||||||||||||||||||| |||| |||||||| |||||||||||||||| Sbjct 23888201 TGATTCATGAGAAGATTGAAAACTTTGAAAGGCTACTGCGAGCTGTGTATGCCCCTCAGA 23888142 Query 107794 ACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGG 107853 |||||||||| |||||||||||| |||||||||||| |||||||||||||| ||||| | Sbjct 23888141 ACATATACTGCATCCACGTGGATGAGAAGTCCCCAGAAACTTTCAAAGAGGCAGTCAAAG 23888082 Query 107854 CCATTATTTCCTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATG 107913 | |||||||| || ||||| ||||||||||| |||||||| |||| | |||| |||| | Sbjct 23888081 CAATTATTTCATGTTTCCCAAATGTCTTCATAGCCAGTAAACTGGTTCGGGTGATTTACG 23888022 Query 107914 CCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAG 107973 ||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 23888021 CCTCCTGGTCCAGGGTGCAAGCTGACCTCAACTGCATGGAAGACTTGCTCCAGAGCTCAG 23887962 Query 107974 TGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCG 108033 |||||||||| ||||| ||||||||||||||||| ||||| || |||||| |||||||| Sbjct 23887961 TGCCATGGAAATACTTCCTGAATACATGCGGGACGGACTTTCCTCTAAAGAGCAATGCCG 23887902 Query 108034 AGATGGTCCTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTT 108093 ||||||||| ||| |||||||||||||| || | ||| || |||||| | ||||||||| Sbjct 23887901 AGATGGTCCAGGCTCTCAAGATGTTGAATGGGAGGAATAGCATGGAGACAGAGGTACCTC 23887842 Query 108094 CTGAGTCCaaaaaaaaTCGCTGGAAATACCGCTATGAG---GTGACAGACACACTGTACC 108150 | || |||| ||| ||||||||||| | || |||| ||| ||||| | || Sbjct 23887841 CCAAGCACAAACAAACCCGCTGGAAATATCACTTTGAGGTAGTGGGGAACACAATACACG 23887782 Query 108151 CTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCT 108210 |||| ||||| |||||| ||||||||| |||||||| | ||||| ||||||||||| | Sbjct 23887781 TAACCAACAAGAAGAAGGATCCTCCCCCTTATAATTTAACTATGTTTACAGGGAATGCGT 23887722 Query 108211 ATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGAC 108270 || ||||||| || |||| |||||||||||||| || | ||||||||||||||| || Sbjct 23887721 ATATTGTGGCTTCCCGAGATTTTGTCCAACATGTTTTGAAGAACCCTAAATCCCAACAAC 23887662 Query 108271 TGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGC 108330 || |||||||||| ||||||||||||||||| || ||||||||||||||||||||||||| Sbjct 23887661 TGATTGAATGGGTAAAAGACACCTATAGCCCTGATGAACACCTCTGGGCCACCCTTCAGC 23887602 Query 108331 GTGCTCCGTGGATGCCTGGCTCTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGA 108390 |||| | ||||||||||||||||||||| | |||||||||||| ||||||||||||||| Sbjct 23887601 GTGCACGGTGGATGCCTGGCTCTGTTCCCAACCACCCCAAGTACGACATCTCAGACATGA 23887542 Query 108391 CTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGC 108450 || | || |||||||| |||||||||||| | || ||||| || || | ||| || | Sbjct 23887541 CTTCTATTGCCAGGCTGGTCAAGTGGCAGGATCATGAGGGCGACATCGATAAGGGTGCTC 23887482 Query 108451 CTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACC 108510 ||||||| || |||||||||||||| | | |||| ||||| |||| ||||| |||||| Sbjct 23887481 CTTATGCTCCTTGCTCTGGAATCCACCAGCGGGCTATCTGTGTTTATGGGGCTGGGGACT 23887422 Query 108511 TGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATG 108570 || ||||||| || || ||||||||||| ||||| |||||||||||||| | ||| |||| Sbjct 23887421 TGCACTGGATGCTTCAAAACCATCACCTGTTGGCCAACAAGTTTGACCCAAAGGTAGATG 23887362 Query 108571 ATAACGTCCTGCAGTGCTTAGAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAAC 108630 |||| | || |||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 23887361 ATAATGCTCTTCAGTGCTTAGAAGAGTACCTACGTTATAAGGCCATCTATGGGACTGAAC 23887302 Query 108631 TTTGAG-----CT------GCA-------CTGT-GGGCCAGGGACTGTGCCAACATGCCC 108671 |||||| || ||| |||| |||| || | ||| | |||| || | Sbjct 23887301 TTTGAGACACACTATGGGAGCATTGCTACCTGTGGGGCAAGAGCATGTACAAACACGCTC 23887242 Query 108672 AGGGCGTACTGGTACTGTGTGGGGTGGGGGACGAGGGCTGTGGAATCCATGGCATCCCCC 108731 || | | |||| || ||| ||||||| ||| |||||| || ||| | ||||||||| Sbjct 23887241 AGAACTTGCTGGGACAGTG-CGGGTGGGAGACCAGGGCTTTGCAATTCGTGGCATCCCTT 23887183 Query 108732 AGGGTCAGAGGGCTGCT 108748 ||| | || || ||||| Sbjct 23887182 AGGATAAGGGGTCTGCT 23887166 >seq227 Length=108555830 Score = 140 bits (154), Expect = 2e-28 Identities = 573/895 (64%), Gaps = 49/895 (5%) Strand=Plus/Plus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 ||||| |||||||||||| ||| || || || || || || || ||||| ||| | ||| Sbjct 87504335 CCACTTAGTAAAGAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAG 87504394 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||||||| | ||| | ||| |||||||| | || || | Sbjct 87504395 ATTGAAATGCTTGACAGGCTGCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 87504454 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAA---AGAGGCGGTCAAGGCCATTATTTCC 107864 || ||||| || ||| ||| || | | || || || | || ||| |||| Sbjct 87504455 CATGTGGACACAAAATCC---GAGGATTCCTATTTAGCTGCAGTGATGGGCATCGCTTCC 87504511 Query 107865 TGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCC 107924 || ||| |||||||| ||||||| |||| ||||||||||| || ||| Sbjct 87504512 TGTTTCAGTAATGTCTTTGTGGCCAGCCGATTGGAGAGTGTGGTTTATGCATCATGGAGT 87504571 Query 107925 AGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCA-GAGCTCAGTGCCA--TGG 107981 | || || |||||||| ||||| ||| | ||| ||| | | | ||||| | ||| Sbjct 87504572 CGGGTTCAGGCTGACCTCAACTGCATGAAGGAC---CTCTATGCAATGAGTGCAAACTGG 87504628 Query 107982 AAGTACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||||||| | ||| || || | || || || || || ||||| || || ||| Sbjct 87504629 AAGTACTTGATAAATCTTTGTGGTATGGATTTTCCTATTAAAACCAACCTAGAAATTGTC 87504688 Query 108042 CTGGCCCTCAAGATGTTGAAGGGTAAGAACAGTATGGAGTCTGA---GGTACCTTCTGAG 108098 | |||||| |||| | ||| | ||||| |||| | || | | || || | Sbjct 87504689 AGGAAGCTCAAGTTGTTAATGGGAGAAAACAGCCTGGAAACGGAGAGGATGCCATCCCA- 87504747 Query 108099 TCCaaaaaaaaTCGCTGGAAATACCGCTATGAGG---------------TGACAGACACA 108143 ||| || | | |||||| | || ||||||| ||||| ||||| Sbjct 87504748 --TAAAGAAGAAAGGTGGAAAAAGCGGTATGAGGTCGTTAATGGAAAGCTGACAAACACA 87504805 Query 108144 CTGTACCCTACCAGCAAGATGAAGGACCCTCCCCCTGATAATTTACCCATGTTCACAGGG 108203 | || ||| || | ||||| | || | ||| | || | || Sbjct 87504806 GGG------ACTGTCAAAAT---GCTTCCTCCGCTCGAAA---CACCTCTTTTTTCTGGC 87504853 Query 108204 AATGCCTATTTTGTGGCCTCTCGAGCCTTTGTCCAACATGTCTTAGACAACCCTAAATCC 108263 | |||||| ||||||| | | | | | ||| |||| || | ||| ||| | Sbjct 87504854 AGTGCCTACTTTGTGGTCAGTAGGGAGTATGTGGGGTATGTACTACAGAACGAAAAAATC 87504913 Query 108264 CAAAGACTGGTTGAATGGGTCAAAGACACCTATAGCCCCGACGAACACCTCTGGGCCACC 108323 |||| | | || |||| ||||||| || ||||| || || | |||||||||||| Sbjct 87504914 CAAAAGTTTATGGAGTGGGCACAAGACACATACAGCCCTGATGAGTATCTCTGGGCCACC 87504973 Query 108324 CTTCAGCGTGCTCCGTGGA-TGCCTGGCTCTGTTCCTAGCCA-CCCCAAGTATCACATCT 108381 | ||| | | | | || | | || ||||| || || |||| || ||||| | | | Sbjct 87504974 ATCCAGAG-GATTCCTGAAGTCCCGGGCTCACTTTCT-GCCAGCCATAAGTACGATTTGT 87505031 Query 108382 CAGACATGACTGCCATCGCCAGGCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCA 108441 | |||||| || | |||||| | ||||||||||| ||| ||||| ||||| || Sbjct 87505032 CTGACATGCAAGCAGTTGCCAGGTTTGTCAAGTGGCAATACTTTGAGGGTGATGTTTCCA 87505091 Query 108442 TGGGGGCGCCTTATGCACCCTGCTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGG 108501 ||| || || || | |||||| |||| |||| | | | | ||||||| || | Sbjct 87505092 AGGGTGCCCCCTACCCTCCCTGCGATGGAGTCCACGTGCGCTCGGTGTGCATTTTTGGAG 87505151 Query 108502 CCGGGGACCTGTACTGGATTCTCCAGAACCATCACCTCTTGGCAAACAAGTTTGA 108556 | || ||| || ||||||| || | || || ||| | || || || |||||||| Sbjct 87505152 CTGGTGACTTGAACTGGATGCTGCGCAAACACCACTTGTTTGCCAATAAGTTTGA 87505206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348260293969896