Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq253 104 2e-17 seq223 91.5 1e-13 seq98 87.8 1e-12 seq247 86.0 5e-12 seq68 84.2 2e-11 seq373 82.4 6e-11 >seq253 Length=75148670 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | | || | |||| Sbjct 15288057 AGGACCAAGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 15288116 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| ||||||| || || || || ||| | |||||||||||| Sbjct 15288117 TCCAGCTGCTTGCCTGCAAAGATAAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 15288176 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 |||| ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 15288177 TGGATTTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCAAGGGTGATGGTC 15288236 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 |||||||||| || || || || || |||||||| Sbjct 15288237 TTGCCGGTCAGGGTCTTCACGAAGATCTGCATTTT 15288271 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || || || || ||||||||||| | | || | |||| Sbjct 15279435 AGGACCAGGTGCAGGGTCGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCT 15279494 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||||||| |||| || || || || || ||| | |||||| ||||| Sbjct 15279495 TCCAGCTGCTTGCCCGCAAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCTTTATCC 15279554 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | | ||||||| |||||| || | ||||||| | Sbjct 15279555 TGGATCTTGGCCTTCACATTTTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 15279614 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||||||| || || || || || ||||| Sbjct 15279615 TTGCCGGTCAGGGTCTTCACGAAGATCTGCAT 15279646 >seq223 Length=128539186 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 120278401 AGCACCAAGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 120278460 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || || || ||| |||| || || || || || || | ||||||||| || Sbjct 120278461 TCCAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 120278520 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | | ||||||| |||||| |||| ||||||| | Sbjct 120278521 TGGATCTTTGCCTTGACATTTTCGATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTC 120278580 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 ||||| |||| || || || || || |||||| Sbjct 120278581 TTGCCAGTCAGAGTCTTCACGAAGATCTGCATT 120278613 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || || ||||| || ||||||||||| | || || | |||| Sbjct 120278173 AGCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGGGTGCGCCCATCT 120278232 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| ||||| || ||| |||| | || ||||| || || | |||||||||||| Sbjct 120278233 TCCAGCTGTTTTCCAGCAAAGATCAACCTCTGTTGGTCAGGAGGGATGCCTTCCTTATCC 120278292 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | | |||||| | | | ||||||| |||||| || | ||||||| | Sbjct 120278293 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCGAGGGTGATGGTC 120278352 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| |||| || || || || || ||||| Sbjct 120278353 TTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 120278384 >seq98 Length=135778131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 2002809 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 2002750 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || |||||||| | || || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 2002749 ATATTGTAGTCAGACAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 2002690 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 2002689 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 2002630 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 2002629 TCCGAGGGTTCACCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 2002570 Query 18324 ATTTT 18328 ||||| Sbjct 2002569 ATTTT 2002565 >seq247 Length=91754291 Score = 86.0 bits (94), Expect = 5e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || || ||||| || ||||||||||| | | || | ||||||| Sbjct 30514634 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCTGAGAGAGTGCGGCCATCTTCC 30514693 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 | |||||||| ||| | || || | || || || || | || ||||| || | Sbjct 30514694 AGCTGTTTGCCGGCAAATATCAGACGCTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 30514753 Query 18237 ATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTT 18295 |||| | || ||||| | ||| ||||||| ||||||| || | ||||||| |||| Sbjct 30514754 ATTT-TGGCTTTGACATTCTCAATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTTTT 30514812 Query 18296 GCCGGTCAATGTTTTTACAAAAATTTGCATTTTT 18329 ||| || | || || ||||| || ||||| ||| Sbjct 30514813 GCCCGTGAGGGTCTTCACAAAGATCTGCATGTTT 30514846 >seq68 Length=92142175 Score = 84.2 bits (92), Expect = 2e-11 Identities = 166/245 (68%), Gaps = 2/245 (1%) Strand=Plus/Minus Query 18086 TTCTTTTTGTTATC--CTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGA 18143 ||| |||| ||| | | || || ||||| | || | ||||| || || || |||||| Sbjct 7889878 TTCCTTTTCTTAGCACCACCACGAAGTCTCAACACAAGATGAAGAGTAGACTCCTTTTGA 7889819 Query 18144 ATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTT 18203 || |||||||| | | || | |||||||| ||| ||||| ||| |||| |||||| Sbjct 7889818 ATATTGTAGTCAGAAAAAGTACGTCCATCTTCCAGTTGCTTGCCAGCAAAGATCAGTCTT 7889759 Query 18204 TGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTG 18263 || ||||| || | ||||||||||| || | ||| || | | | | || Sbjct 7889758 TGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATCGTA 7889699 Query 18264 TCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGC 18323 || ||| || || | ||||||| | || || || | ||||| || ||||| ||| Sbjct 7889698 TCCGAGGGTTCAACCTCGAGGGTGATGATCTTCCCCGTAAGGGTTTTCACGAAAATCTGC 7889639 Query 18324 ATTTT 18328 ||||| Sbjct 7889638 ATTTT 7889634 >seq373 Length=85787240 Score = 82.4 bits (90), Expect = 6e-11 Identities = 150/216 (69%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| || || |||||||| || ||||||||||| | | || | ||||||| Sbjct 11745818 ACCAGGTGCAGGGTCGATTCTTTCTGGATGTTGTAGTCAGAAAGAGTGCGGCCATCTTCC 11745759 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCAC--GCCTTCCTTATC-- 18232 | || |||| ||| |||| || || || || || ||||| |||||||||||| Sbjct 11745758 AGCTGCATGCCTGCAAAGATGAGCCTCTGCTGGTCG--GGGCAGATGCCTTCCTTATCCT 11745701 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || ||| | ||| || | | | | ||||||| |||||| |||| ||||||| | Sbjct 11745700 GGATATTGG--CCTTCACATTTTCGATGGTGTCACTGGGCTCCACATCAAGGGTGATGGT 11745643 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||| | |||| || || || || | |||||||| Sbjct 11745642 CTTGTCAGTCAGGGTCTTCACGAAGACCTGCATTTT 11745607 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379334734996980